Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_E17
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.9  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   5.0  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   6.6  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.6  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.6  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    25   8.7  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   8.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   8.7  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 630 LTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEK 526
           L E S S   T+T NS  R+YAIK+ ++  I  EK
Sbjct: 105 LGEGSYSTVLTATENSTKREYAIKVLDKRHIIKEK 139


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 657 NESKLAVLALTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKI 481
           NE   +VLA T  +  LKC         + A++ K++ P GT+       +P+ K +K+
Sbjct: 430 NEQLNSVLAATNLATELKCEDINKLKQLRLALETKKDLP-GTKVQLKPAYSPEGKLLKL 487


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
 Frame = -2

Query: 651 SKLAVLALTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSL 472
           S + +  L  P       ++ +  T  + + +KE    G   ++   +   I  + + + 
Sbjct: 322 SLILIGLLVSPDDPRLMGNSSDGSTSPFVLAIKEANIRGLPSVFNAVII--ISTVSVANS 379

Query: 471 CTSIAGIAIQ--------PMLIREASSIGSTSLLVAICSVVGFFTFV 355
           CT  A   +         P        +G   L +A+C + GFF ++
Sbjct: 380 CTFTASRTLHAMAAKGDAPRFFAYTDRLGRPLLAMAVCLLFGFFAYI 426


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 130 WVIEESCFNEQRLAISMHSSEH 195
           W++  SCFN  R+A S++  E+
Sbjct: 513 WMLGNSCFNRARIAHSIYHWEY 534


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 244 SXCCKEINCNRFVCRSFGVVVNFGNILFGDEMQQYWSYKREESH 375
           S C KE   NR +   F + ++F + L  ++  Q W  +  ESH
Sbjct: 181 SDCMKEFT-NRNLREDFLLHISFASSLTNEDEYQNWVSQDRESH 223


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 424 SIKHRKYFFIGSHMFSGGILHVC 356
           S K R +F +G H+ S G L+VC
Sbjct: 47  SSKQRSWF-VGDHVVSDGYLYVC 68


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 1/137 (0%)
 Frame = -2

Query: 558 LKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICS 379
           +K  +P+ T   Y         A+  FSL     G+ +       A  +G    L++ C 
Sbjct: 102 VKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELSADIVGLLYALISTCI 161

Query: 378 VVGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATXRIHEFKVEDVFVPDVP 199
            V    F + I +   +    T+ +YN       +  + F     +  ++    ++P+V 
Sbjct: 162 FVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWLYQEGFAYLPEVG 221

Query: 198 G-MFTTMHANGKPLFIE 151
             +F  +  NG   F +
Sbjct: 222 SPVFLNLIYNGLSHFFQ 238


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = -2

Query: 624 EPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIA 448
           EP  + + + + ++ T   ++     T   +  +Y G L P +    +F L  SI  +A
Sbjct: 49  EPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,667
Number of Sequences: 5004
Number of extensions: 61618
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)