Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_E17
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0661 + 26532732-26532997,26533933-26534073,26535734-26535851     29   3.9  
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536...    28   6.9  
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989...    28   6.9  

>03_05_0661 + 26532732-26532997,26533933-26534073,26535734-26535851
          Length = 174

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +1

Query: 313 GNILFGDEMQQYWSYKREE 369
           GN++FG  +Q+YW+ K+++
Sbjct: 142 GNVIFGPPLQKYWAEKQQQ 160


>12_02_0179 -
           14952398-14952511,14953333-14953356,14953543-14953670,
           14953765-14953891,14953930-14954013,14954245-14954397,
           14954478-14954579,14955036-14955128,14955289-14955350,
           14955395-14955522,14957053-14957291,14958040-14958471,
           14958774-14958912,14960564-14960883
          Length = 714

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 148 CFNEQRLAISMHSSEHSWYIRNKYIFYFEFMNSXC 252
           C NEQ+  +     +H   ++N YIF F    S C
Sbjct: 554 CINEQQTDLKNWMKQHGGDLQNVYIFPFLHQESHC 588


>09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,
            9893330-9893557,9894095-9894261,9894312-9894395,
            9894614-9894820,9894919-9895251,9895371-9895513,
            9895607-9895723,9895824-9895980,9896054-9896157,
            9896272-9896432,9896518-9896707,9896732-9896834,
            9896950-9897231,9897327-9897649,9897750-9897786,
            9898109-9898162,9898292-9898368,9898449-9898502,
            9898738-9898822,9900289-9900426,9900592-9900603
          Length = 1150

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 541  YRHRKNILRNINTSDKGHKNILFMHKHSR 455
            YR  KN+++ ++T   G  ++LF  K+S+
Sbjct: 942  YRRNKNLIKELSTPHDGSSDLLFPTKYSQ 970


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,174
Number of Sequences: 37544
Number of extensions: 335950
Number of successful extensions: 781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)