Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_E14
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 81 3e-16
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 1.3
11_06_0584 - 25220371-25222917 28 3.0
07_03_0035 - 12677942-12678568 28 3.0
06_03_1078 + 27418886-27419215 28 3.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 6.9
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 27 9.1
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376 27 9.1
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 27 9.1
02_05_0192 + 26602247-26602617,26602701-26603016 27 9.1
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342... 27 9.1
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 81.4 bits (192), Expect = 3e-16
Identities = 37/65 (56%), Positives = 50/65 (76%)
Frame = -1
Query: 342 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 163
+S +E+AC +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE +V DLI
Sbjct: 1 MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60
Query: 162 NIGSG 148
++GSG
Sbjct: 61 SVGSG 65
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -1
Query: 378 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 256
G+R+LA+ V+K + S +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289
>11_06_0584 - 25220371-25222917
Length = 848
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 211 SVRQSLGRHQCP*PDHQHRLWSGCCSGRWWSASRCCC 101
++R++ R + P HQH+L RW ++ CCC
Sbjct: 387 NIRKTARRRELPQKQHQHKL-------RWTQSTICCC 416
>07_03_0035 - 12677942-12678568
Length = 208
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = -2
Query: 218 GQVCSPKPWKASMSVT*SPTSALEWVLLRPLVERQPLLLQPA 93
G V SP + A M SPT+A W LLRP PL L A
Sbjct: 96 GVVASPARFGAVMLA--SPTAANRWFLLRPARLPLPLALPAA 135
>06_03_1078 + 27418886-27419215
Length = 109
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 217 ARSVRQSLGRHQCP*PDHQHRLWSGCCSGRWW 122
+RS R G + P P H R+W+G G WW
Sbjct: 29 SRSNRAPSGAFRPPDPRHPGRIWTG---GGWW 57
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 270 HQLRQHHHPPG*EQSKH 320
HQ R+HHHPP + H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 26.6 bits (56), Expect = 9.1
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -1
Query: 369 QLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 190
Q A LK K +AC L+LV DD T T+ KA A D+ G +AL
Sbjct: 657 QAADHALKRQVKHSVACGVDWLVLVSDDSDFT----DTVRKARAADLRTVVVGDGCRALG 712
Query: 189 GI 184
+
Sbjct: 713 SV 714
>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
Length = 798
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 262 FHHLESGGCRCRAILARSVRQSLGRHQCP*PDHQHRLWSGCCSGRW-WS 119
FHH + G C CR + ++ R + P + +WS S W WS
Sbjct: 692 FHHFKDGFCSCRDYWIQVSKRPFDR-EVHHPLQANCIWSIVLSRSWVWS 739
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 151 WSGCCSGRWWSASRCCC 101
W+ S WWS SR CC
Sbjct: 151 WNADRSPPWWSPSRWCC 167
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 157 RLWSGCCSGRWWSASRCC 104
RL +G GRWWSA C
Sbjct: 47 RLSAGSGCGRWWSAGDAC 64
>01_06_1007 -
33733500-33733604,33733837-33733917,33734191-33734238,
33734364-33734549,33735148-33735678,33735823-33735864,
33735945-33736065,33736200-33736281,33737169-33737227,
33738492-33738564,33738694-33738913
Length = 515
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 212 VCSPKPWKASMSVT*SPTSALEWVLLRPLV 123
VC +P SP +L WVLLRP++
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPIM 511
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,223,852
Number of Sequences: 37544
Number of extensions: 216495
Number of successful extensions: 552
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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