Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_E12
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095...    44   2e-04
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53...    40   0.003
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264...    36   0.031
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036...    28   8.2  
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947...    28   8.2  
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858...    28   8.2  
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975...    28   8.2  

>03_06_0698 +
           35608666-35608709,35608810-35608958,35609493-35609531,
           35610024-35610163,35611130-35611244,35611281-35611399,
           35611413-35611979
          Length = 390

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 11/62 (17%)
 Frame = -2

Query: 838 KQTTEMLPGILSQLGPDGLNRLKRI---------ASSVAAPKPLEEDDEVPNLV--GNFD 692
           K+  ++LPGI++QLGPD +  LKRI         A+   A    E DD+VP LV   NF+
Sbjct: 64  KELQDVLPGIINQLGPDNMEHLKRIAEEMQKQVAAAGATAQAKEENDDDVPELVPGENFE 123

Query: 691 EA 686
           E+
Sbjct: 124 ES 125


>03_01_0067 -
           538929-539143,539306-539344,539579-539635,539727-539875,
           540298-540365,542009-542093,542185-542246,542612-542700,
           543034-543088,544127-544252,544477-544576,544697-545499
          Length = 615

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
 Frame = -2

Query: 844 EXKQTTEMLPGILSQLGPDGLNRLKRIA-----------SSVAAPKPLEEDDEVPNLV-- 704
           + K+  ++LP I++QLGPD L+ L+R+A           +  +A    ++DD+VP LV  
Sbjct: 529 QTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQVPGAEAGASAGNAQDDDDDVPELVPG 588

Query: 703 GNFDEASKQ 677
             F+EA+++
Sbjct: 589 ETFEEAAEE 597


>10_08_0411 -
           17725661-17725842,17726066-17726104,17726379-17726435,
           17726524-17726672,17727195-17727262,17727796-17727798
          Length = 165

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 844 EXKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPLEEDDE 719
           + K+  ++LP I++QLGPD L+ L+R+A       P    +E
Sbjct: 90  QTKKLQDLLPSIINQLGPDNLDNLRRLAEQFQKQAPGASGEE 131


>05_03_0564 -
           15502458-15503303,15503394-15503474,15503572-15503620,
           15503786-15503828,15504576-15504633,15504720-15504858,
           15504980-15505107
          Length = 447

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 790 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 686
           +G   +  +    A  +P++ DDE  NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214


>05_03_0563 -
           15493570-15494415,15494506-15494586,15494684-15494732,
           15494898-15494940,15495688-15495745,15495832-15495970,
           15496092-15496219
          Length = 447

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 790 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 686
           +G   +  +    A  +P++ DDE  NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214


>05_03_0562 -
           15484733-15485578,15485669-15485749,15485847-15485895,
           15486061-15486103,15486851-15486908,15486995-15487133,
           15487255-15487382
          Length = 447

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 790 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 686
           +G   +  +    A  +P++ DDE  NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214


>02_02_0491 -
           10896463-10897172,10897246-10897353,10897457-10897558,
           10897674-10897772,10898995-10899093,10900622-10900943
          Length = 479

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 387 PEPSLRIKNLVSPXHHITLSKQMQYMMKFIHPG 485
           P P   + +L  P   I + + M ++MK +HPG
Sbjct: 231 PTPPAALSSLAHPAAGIHIQRGMLFLMKKLHPG 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,720
Number of Sequences: 37544
Number of extensions: 301736
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)