Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_E12
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    66   3e-11
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    31   1.4  
AF078790-10|AAC26931.1|  197|Caenorhabditis elegans Hypothetical...    29   4.2  
AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts hom...    28   7.3  
AF047653-1|AAC04458.2|  272|Caenorhabditis elegans Hypothetical ...    28   7.3  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
 Frame = -2

Query: 844 EXKQTTEMLPGILSQLGPDGLNRLKRIASSVA--APKPLEEDDEVPNLVGNFDEASK 680
           + KQ TEMLPGIL+QLGP+ L  LK++A++V    P    ED++VP LVG+FD ASK
Sbjct: 97  DNKQITEMLPGILNQLGPESLTHLKKLANNVTKLGPDGKGEDEDVPELVGDFDAASK 153


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 805 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFD 692
           S+ G  G +RL   A+  A P  ++   ++PNL  NFD
Sbjct: 203 SEAGSTGKDRLLVTAAVAAGPATIDAGYDIPNLAPNFD 240


>AF078790-10|AAC26931.1|  197|Caenorhabditis elegans Hypothetical
           protein F36H12.5 protein.
          Length = 197

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 97  EDTGSDKMMSENDWKKREKKEQKNVND 17
           E++  DK +SEND KK++KK + +  D
Sbjct: 141 ENSEFDKTLSENDGKKKKKKNKDDEKD 167


>AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts
           homolog) family protein 2 protein.
          Length = 849

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = -1

Query: 380 CSPIQMQLFLIDHQPFQHCGILILK*ALDKCYKPTVEKLIQNVLKLTLNS*GY--ECIKI 207
           C+   ++LF +++   +    L L   L+KC     EKL+++ L   L    +  E + I
Sbjct: 276 CAVEALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDI 335

Query: 206 KEAFFEN--VKYXL-EKIVRHVQFCLQVFXQLKKQ 111
            EA FEN  ++  L + I+  +  C Q+  +L ++
Sbjct: 336 VEALFENQTIRQKLRDSILARMPDCSQLARRLMRK 370


>AF047653-1|AAC04458.2|  272|Caenorhabditis elegans Hypothetical
           protein W02F12.2 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 LKRLMIYQKQLH-LNGAARFPEPSLRIKNLVSPXHHITLS 446
           L  +M+ ++ LH +NG   FP+  L    L S  +H TL+
Sbjct: 48  LVNIMLLRRYLHDVNGGLIFPQLLLTFNGLASTYYHATLN 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,788,863
Number of Sequences: 27780
Number of extensions: 300295
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)