Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_E05
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 59 6e-10
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 37 0.002
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 2.4
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 26 4.2
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 26 5.5
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.6
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 9.6
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 58.8 bits (136), Expect = 6e-10
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Frame = -1
Query: 456 DKYPXAKVHYLVLPHE-EINSIYKLN--KSHISLLEEF---------GNIFKELKE---- 325
D +P +K+H L++ + + ++ L H SL+E+ G IF E +
Sbjct: 63 DMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQ 122
Query: 324 --ENES---ELRAGFHAIPSMQRMHMHVISTDMISTSLKTKIHWXSFCTKFFIPYDELLQ 160
NE+ ++ GFHA PSM +H+H+++ D +S SLK H+ SF + FF+ D
Sbjct: 123 QLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKIDTPTS 182
Query: 159 ELKDIGNIRKIPSELHTSLMKTPLQCNQC 73
L G + TSL + L+C +C
Sbjct: 183 NLPTRGTL--------TSLFQEDLKCWRC 203
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = -1
Query: 510 MKDPNSXXXXXXXXXXXKDKYPXAKVHYLVLPHE-EINSIYKLNKSHISLLEEFGN-IFK 337
++DP+ D+ + ++ + + H +I SI L HI LLE N +
Sbjct: 158 VEDPDPLNGFIVIPDLKWDRQTMSALNLMAIVHATDIASIRDLKYKHIPLLENIRNKVLT 217
Query: 336 ELKEE---NESELRAGFHAIPSMQRMHMHVISTD 244
E+ ++ ++++L+ H +PS +H+H++ D
Sbjct: 218 EVPKQFSVDKNQLKMFVHYLPSYYHLHVHILHVD 251
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -1
Query: 432 HYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESEL 307
++++ PH + + K+ + H +L +F +F+ L ENE +
Sbjct: 408 YFMIFPHSDQSLQNKVFELHSTLAIKFDELFRLLNLENEESV 449
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 411 EEINSIYKLNKSHISLLEEFGNIFKEL 331
EE+ S++ ++KS S +FGN+F L
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLL 1347
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 228 LKTKIHWXSFCTKFFIPYDELLQELKDIGNIRKIP 124
L+T IH +FC FF + KD+ RK P
Sbjct: 3 LETLIHGVTFCVPFFSKSARIHTLSKDVFQQRKFP 37
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = -1
Query: 432 HYLVLPH--EEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMH 259
H+L+ H EI +Y L S ++ ++ S ++ H I + +
Sbjct: 317 HFLISDHIFSEIQKVYFLPSSQNDSFDDVVACLRQKSTPYLSFIKKARHLIQVSRDKYKL 376
Query: 258 VISTDMISTSLKTKIHWXSFCTKFFIPYDELLQEL 154
IST+ I + +++ W F K + Y L+QE+
Sbjct: 377 PISTEEIKPVVYSQVTWTEF-EKKLLRY--LVQEM 408
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 414 HEEINSIYKLNKSHISLLEEFGNIFKELKEENESEL 307
H+ +N++ + K + LEE G+ KEL EE++ +
Sbjct: 545 HKALNTLDEETKHQV--LEEIGDYVKELDEESKKAI 578
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 183 IPYDELLQELKDIGNIRKIPSELHTSLMKTPLQ 85
+P LLQ L ++ ++ +P+EL T +++ L+
Sbjct: 460 VPDGYLLQLLSEVNSLNMVPAELATFFVESMLR 492
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 381 KSHISLLEEFGNIFKELKEENESE-LRAGFHAIPSMQRMHMHVISTDMISTSLKTK--IH 211
K + + + E + +NE + L + +IP ++V++ ++ S SLK+K I
Sbjct: 330 KYSVGISTPYLRTLNETRSKNEKKALESRKSSIPLQMNYALYVVNEELQSLSLKSKRNIT 389
Query: 210 WXS 202
W S
Sbjct: 390 WVS 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,003
Number of Sequences: 5004
Number of extensions: 41670
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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