Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_E05
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 75 7e-14
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 34 0.11
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 29 3.3
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 29 4.3
07_03_0438 - 18200329-18200430,18201203-18201335,18201964-182020... 28 5.7
05_01_0105 + 696604-696846,696880-697989 28 5.7
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340... 28 7.5
11_06_0086 + 19914234-19914382,19914590-19914653,19914793-199148... 27 9.9
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 74.5 bits (175), Expect = 7e-14
Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Frame = -1
Query: 450 YPXAKVHYLVLPHEE-INSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQ 274
Y AK H LV+ ++ ++S+ + K H+ LL + + ++ L +PSM+
Sbjct: 592 YLQAKRHVLVVSRKDGLDSLADVKKEHLPLLRRMHSAGVKWAQKF---LEEDSSLVPSMR 648
Query: 273 RMHMHVISTDMISTSLKTKIHWXSFCTKFFIPYDELLQELKDIGNIRKIPSELHTSLMKT 94
++H+H+IS D S SLK K HW SF T FF+ ++++E+ G+ I S+ M+
Sbjct: 649 QLHLHIISQDFNSASLKNKKHWNSFTTTFFLDSVDVIEEIDQRGS-ATISSDDRVLAME- 706
Query: 93 PLQCNQCSFKPKNMPEXKEH 34
L+C++C N+P+ K H
Sbjct: 707 -LRCHRCRSAHPNIPKLKSH 725
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -1
Query: 432 HYLVLPHEEI---NSIYKLNKSH--ISLLEEFGNIFKELKEENESELRAGFHAIP--SMQ 274
HYLV+P E I N++ + + H +S + G N E R GFH P S+
Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117
Query: 273 RMHMHVIS 250
+H+H ++
Sbjct: 118 HLHLHCLA 125
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = -1
Query: 453 KYPXAKVHYL--------VLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 298
+Y AK+H+L +LPHE +N +Y ++ L+ G + +L E+ + LRA
Sbjct: 79 EYKDAKLHFLKIQYETFSILPHESVNDMYGRLNVIVNDLKGLGATYTDL-EDAQKMLRAL 137
Query: 297 FHAIPSMQRMHMHVISTDMISTSLKTKIH 211
++ M ++ M SL KI+
Sbjct: 138 PEKYETLVTMLINSDMLRMTPASLLVKIN 166
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 264 MHVISTDMISTSLKTKIHWXSF---CTKFFIPYDELLQELKDIGNIRKIPSEL 115
MH++S +I K I W + +PYD L+Q +DI IR + ++L
Sbjct: 171 MHLVSRYLIREE-KEMIDWNKVERPTPEMVVPYDSLVQAPRDIPEIRNLLNKL 222
>07_03_0438 -
18200329-18200430,18201203-18201335,18201964-18202034,
18202377-18202466,18203200-18203288,18203886-18203961,
18204094-18204264
Length = 243
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 183 IPYDELLQELKDIGNIRKIPSELHTSLM 100
+PYD+L+QEL D+ N+R++ L M
Sbjct: 114 LPYDQLMQEL-DVSNVRELEDFLINECM 140
>05_01_0105 + 696604-696846,696880-697989
Length = 450
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Frame = -1
Query: 453 KYPXAKVHYL--------VLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 298
+Y AK+H+L +LPHE +N +Y ++ L+ FG + +L E + LRA
Sbjct: 93 EYKDAKLHFLNIQYETFSMLPHESVNDMYGRLNVIVNGLKGFGANYTDL-EVAQKMLRAL 151
Query: 297 FHAIPSMQRMHMHVISTDMISTSLKTKIH 211
++ M ++ + M SL KI+
Sbjct: 152 PEKYETLVTMLINSDMSRMTPASLLGKIN 180
>11_01_0443 -
3399226-3399242,3399551-3399731,3399847-3399936,
3400377-3400459,3400540-3400667,3400747-3401002,
3401094-3401199,3401300-3401366,3401467-3401580,
3401811-3401889,3402189-3402359,3403135-3403267,
3403874-3404033,3404119-3404261
Length = 575
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 294 HAIPSMQRMHMHVISTDMISTSLKTKIHWXSFCTK 190
HA SM +HM + S + L +H SFC K
Sbjct: 339 HAAISMVSLHMRIFSLLIPCFFLMVSVHLTSFCVK 373
>11_06_0086 +
19914234-19914382,19914590-19914653,19914793-19914882,
19915000-19915056,19915147-19915195,19915393-19915469,
19915686-19915725,19915813-19915907,19916007-19916171,
19916317-19916427,19916515-19916602,19916691-19916757,
19916822-19916939,19917022-19917139,19917398-19917643,
19917736-19917833,19917961-19918143,19918237-19918356,
19918515-19918565
Length = 661
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 411 EEINSIYKLNKSHISLLEEFGNIFKELKEENE 316
+ + S+ K ++HI + FG++ ELK E E
Sbjct: 161 QSVLSVVKRCRAHIKAIVSFGDVTSELKREAE 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,171
Number of Sequences: 37544
Number of extensions: 217994
Number of successful extensions: 569
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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