Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D23
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   1.8  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   4.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   4.1  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    26   5.5  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   5.5  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   9.5  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 117  KYILSCENII*NWKHEMLKNILH 49
            K+ LSC +++ N +HE++K++ H
Sbjct: 1364 KFCLSCVDMLKNLEHELIKHLKH 1386


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 136 IPTILFQFLDKLLFRNFIKN 195
           IPT+ FQFL+++L+R    N
Sbjct: 180 IPTVKFQFLERILWRTLRGN 199


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 137 YRR--FYFNFWINYYFVIS*RTTNNMNIILGSACVS*SDKSDSKGTYLVFLCIAICLEYK 310
           Y+R   Y +FWI   FV    T  N   ILG   ++     + K  +L  L +   + +K
Sbjct: 537 YKRSLIYSSFWILNPFVAIISTRGNCEAILGILSIALLYLIEKKSVWLASLILGFSVHFK 596


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 395 KVLKEFSRSIHSLTSNIAYKMK*NSVKFSYILGKLQYIKTLS 270
           +++K    S+ SLTS I Y  K N V+++   G     +TLS
Sbjct: 125 QMMKAKDDSVKSLTSGIEYLFKKNKVEYAKGTGSFIDPQTLS 166


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = -3

Query: 422 RIKKRNYIYKVLKEFSRSIHSLTSNIAYKMK*NSVKFSYILGKLQYIKTLSKCLLNQTYH 243
           ++ KR  +YKV+ +F  S     SN+A  M+     F    GKL    T   CLL +   
Sbjct: 491 KLSKR-LVYKVICKFEESERDFYSNLARNMERTMSNF-VNSGKLGKNYTNILCLLLRLRQ 548

Query: 242 FMIHKQS 222
              H QS
Sbjct: 549 ACNHPQS 555


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 559 FNIHLSYVLPDILMKYIGPYRRTTF 485
           +NI ++Y   D+L+K+  P  R  F
Sbjct: 475 YNIEIAYYFTDVLLKWFQPIIRYEF 499


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 40  KQIMQNVFQHFVFPISNYIFTRQ 108
           ++IMQ++ +H +FP+  ++  RQ
Sbjct: 19  QKIMQHLDRHLIFPLLEFLSLRQ 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,707
Number of Sequences: 5004
Number of extensions: 52829
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)