Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D23
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155...    29   4.3  

>11_01_0198 -
           1556215-1556298,1556412-1556580,1556666-1556921,
           1557000-1557114,1557191-1557441,1557565-1557892,
           1558197-1558358,1558846-1558985,1559325-1559436,
           1560028-1560200,1560411-1560506,1560687-1560930
          Length = 709

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -3

Query: 422 RIKKRNYIYKVLKEFSRSIHSLTSNIAYKMK*NSVKFSYILGKLQYIKTLSK 267
           +IKK +Y + + KE     HSLT+ +  ++K + V    +  K +Y+KT+ +
Sbjct: 341 QIKKGSYDHFMQKEIHEQPHSLTTTMRGRVKDSGVLLGGLKEK-EYLKTIRR 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,495
Number of Sequences: 37544
Number of extensions: 230969
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)