Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D23
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199169-4|ABO33250.1|  275|Caenorhabditis elegans Hypothetical ...    29   2.2  
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H...    27   8.8  

>AC199169-4|ABO33250.1|  275|Caenorhabditis elegans Hypothetical
           protein F38A1.10 protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = -1

Query: 592 RRFCVFLKSTLFNIHLSYVLPDILMKYIGPYRRTTF*HCRRVC*VFLSFNYLL*ASFESR 413
           R +C + ++ + + +L+YV       ++  Y RT F     +  + LS N +    +++ 
Sbjct: 45  RNWCHY-QNPVISSYLAYVPDQYTSNFLASYARTAFRSANGIFWIGLSRNNISSWVWDNG 103

Query: 412 NGIIYTKF*KSSHDQYIA 359
           N + YT F       Y+A
Sbjct: 104 NPVTYTNFGTQLGQNYVA 121


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 161 WINYYFVIS*RTTNNMNIILGSACVS*SDKSDSK 262
           W  +YF I+ + T  + + L + C   SDKS+ K
Sbjct: 599 WAFFYFTIAVKFTGGILLFLAAYCYQESDKSNGK 632


>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = +1

Query: 4   SVTHYILVFFFVKQI---MQNVFQHFVFPISNYIFTRQNIFSFNLFKI----PTILFQFL 162
           S+T +I   F V Q    +  VFQ F FP+  +  +  ++ SF +F+I      + FQF 
Sbjct: 99  SITLWIFPVFPVFQFPVPVFPVFQVFQFPVFQFWISSFSVSSFLVFQIFCSRFPVSFQFQ 158

Query: 163 DKLLFRNFI 189
           +K   R+ I
Sbjct: 159 NKFFLRHLI 167


>Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 73  VFPISNYIFTRQNIFSFNLFKIPTILF 153
           +F  S +IF  QN + FN+  + T+LF
Sbjct: 80  IFLTSCFIFAFQNFYDFNITIVDTLLF 106


>Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical
           protein F10D11.5 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 10  THYILVFFFVKQIMQNVFQHFVFPISNYIFTR 105
           THY  V  F+  +   +F HFV    N I T+
Sbjct: 105 THYAPVVVFIDHLSWPIFLHFVIVNRNMIITK 136


>Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 73  VFPISNYIFTRQNIFSFNLFKIPTILF 153
           +F  S +IF  QN + FN+  + T+LF
Sbjct: 80  IFLTSCFIFAFQNFYDFNITIVDTLLF 106


>AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H
           exchanger isoform 1 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 73  VFPISNYIFTRQNIFSFNLFKIPTILF 153
           +F  S +IF  QN + FN+  + T+LF
Sbjct: 79  IFLTSCFIFAFQNFYDFNITIVDTLLF 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,700
Number of Sequences: 27780
Number of extensions: 281281
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)