Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D21
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    30   0.39 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   2.7  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   4.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   8.4  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   8.4  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   8.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.4  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   8.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.4  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   8.4  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 561 WLQRQRTPLWRHPMYRPILNTLQRRLQVFLLRK*AGSVL 677
           WL+   + LW   + R    T+QRRL  F LRK  GS+L
Sbjct: 6   WLKNSSSWLWTAALSR----TVQRRLLAFALRKLIGSIL 40


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
 Frame = +2

Query: 509 TSDTGLSLIGHPRRDHLVAATPAHTIMATPDVPPHPKYPPA*V--TSIPPPKMSRLRTVG 682
           TS TG S    P        + +         P  P  PP     TS PPP  S   T  
Sbjct: 322 TSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 381

Query: 683 AYKSL*SGMTSHNTPHAIPRQIPTNIASKPL 775
           +   L S  TS  T  +IP   PT  ++ P+
Sbjct: 382 SSSPLLSTSTSCTTSTSIP---PTGNSTTPV 409



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +2

Query: 560 VAATPAHTIMATPDVPPHPKYPPA*VTSIPPPKMSRLRTVGAYKSL*SGMTSHNTPHAIP 739
           +  T   T   TP VPP         TS PPP  S   T  +   L S  TS  T  +IP
Sbjct: 291 IPPTGNSTTPVTPTVPPTSTSS----TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346

Query: 740 RQIPTNIASKPL 775
              PT  ++ P+
Sbjct: 347 ---PTGNSTTPV 355


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 498 LWRIFEPMLFTLSGYFLDVSQLNTKEFCLI 409
           ++RIFE M+FTL  +  D  +L     CL+
Sbjct: 449 IFRIFEKMIFTLQHFHEDFLRLQNSFNCLL 478


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 106 NIAW--RFLSSSDVVACIIISRFKSDKTKQCTPVLY 5
           NIAW   +L+S   + C+I+S   S     CT +++
Sbjct: 597 NIAWLEAYLTSQKNITCLIVSHDSSFLDHVCTDIIH 632


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 707 MTSHNTPHAIPRQIPTNIASKPLIIL 784
           +   NT  AIP QI TN+   PL+ L
Sbjct: 708 LAGQNTGAAIPLQISTNLRLLPLLCL 733


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 596 PDVPPHPKYPPA*VTSIPP 652
           P  PP   YPPA  +S PP
Sbjct: 207 PPPPPQQNYPPAASSSAPP 225


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 578 HTIMATPDVPPHPKYPPA*VTSIPPPKMSRLRTVGAYKS 694
           HTI+ +P  PP    P   +T++  P+ +R  +  + KS
Sbjct: 562 HTIVPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSKS 600


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 590 ATPDVPPHPKYPPA*VTSIPP 652
           +TP VP  P  PP+   S+PP
Sbjct: 413 STPPVPTPPSLPPSAPPSLPP 433


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 136 GPHPPIARLENIAWRFLSSSDVVACIIISRFKSDKTKQ 23
           G HP     E I WRF S  D+ A    SR  S+  ++
Sbjct: 751 GHHPDKTPSEYIQWRFQSGEDLEAMDKASRVISEADEE 788


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 572 PAHTIMATPDVPPHPKYPPA*VTSIPPP 655
           P   I+ TP   P P  PPA +   PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPP 763


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 603 TSGVAIMVCAGVAATRWSRRGWPINDNPVSEVYKLL 496
           +S  A+  CA     RW   G P+ +N V E+Y L+
Sbjct: 393 SSKSALACCALQGINRWCLTGTPLQNN-VDELYSLV 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,869,208
Number of Sequences: 5004
Number of extensions: 86054
Number of successful extensions: 272
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)