Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D20
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   193   2e-50
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   191   7e-50
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   1.1  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    28   1.1  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   1.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   1.9  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   3.3  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   4.4  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   5.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   7.7  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   7.7  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   7.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  193 bits (470), Expect = 2e-50
 Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 2/225 (0%)
 Frame = -1

Query: 681 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 502
           Q+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                    
Sbjct: 63  QIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGV 122

Query: 501 XXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 322
                +    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG
Sbjct: 123 TEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPG 182

Query: 321 YDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKK 142
           +D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY +
Sbjct: 183 FDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAE 242

Query: 141 AHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNKNQAK 13
           A+  IR DPS +K  K+      +  ++ +RKLT  ERK +  AK
Sbjct: 243 AYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  191 bits (466), Expect = 7e-50
 Identities = 97/225 (43%), Positives = 137/225 (60%), Gaps = 2/225 (0%)
 Frame = -1

Query: 681 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 502
           Q+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                    
Sbjct: 63  QIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGV 122

Query: 501 XXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 322
                +    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG
Sbjct: 123 TEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPG 182

Query: 321 YDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKK 142
           +D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY +
Sbjct: 183 FDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAE 242

Query: 141 AHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNKNQAK 13
           A+  IR DPS +K  K+      +  +  +RKLT  ERK +  AK
Sbjct: 243 AYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -1

Query: 165 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQ 19
           ++E+  K   EA + +   +KKE KK+  K+K+  K K    E+K K++
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK---KEKKKKSE 474


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = -1

Query: 240 SLEQDDE-DSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRW 64
           SLEQD +   FK Q   Y +     D IE + + +   ++     K   ++K   K  + 
Sbjct: 116 SLEQDPKFQEFKVQRESYSQTASNDDVIEKL-QTSTPLLQYLAEKKNAVVEKGKSKPSKK 174

Query: 63  N---KRKLTLAERKNKNQAKEG 7
           +   K+KL LAE+   N +K G
Sbjct: 175 SVKAKKKLRLAEKPASNNSKAG 196


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 135 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKE 10
           E I   PS K+K+ KK+  K+K   KR    A  + K   K+
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -1

Query: 231  QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 70
            +++++S  ++ +K ++  V        +KK +E IR+D       LK+D  K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 537 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 629
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -1

Query: 159 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKE 10
           EA  K+  + ++ +   K++EL++    QKR  K+K    E+K K Q +E
Sbjct: 636 EARKKREEQRLKREQEKKQQELER----QKREEKQKQKEREKKLKKQQQE 681


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 174 TADAIEAIYKKAHEAIRADPSHKKKELK 91
           TA  IEA+YKKA+  I+ D +H  K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -1

Query: 138 HEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKEG 7
           HE  RA    +KKE + ++V++KR NK       ++ K+Q KEG
Sbjct: 332 HEQSRALKEKRKKE-QDENVRRKRENK-------KRRKDQKKEG 367


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = -1

Query: 300 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 121
           FNA   R+    +  A+       D E  F  +       G  A+   +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418

Query: 120 DPSHKKKE 97
              + KKE
Sbjct: 419 SSENNKKE 426


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 120 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKEG 7
           DPS K K  K   +  ++W  + LT A R      ++G
Sbjct: 18  DPSKKYKPFKGIQLPNRQWPNKVLTKAPRWLSTDLRDG 55


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 255  AEYMRSLEQDDEDSFKRQFSKYIK 184
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,565
Number of Sequences: 5004
Number of extensions: 49044
Number of successful extensions: 227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)