Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_D20
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 224 4e-59
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 223 1e-58
02_01_0475 + 3422629-3422695,3422960-3423216 31 1.1
05_04_0084 - 17788077-17789240 29 2.6
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 3.4
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512... 29 4.5
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 4.5
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 224 bits (548), Expect = 4e-59
Identities = 107/217 (49%), Positives = 145/217 (66%)
Frame = -1
Query: 681 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 502
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 61 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 120
Query: 501 XXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 322
++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G
Sbjct: 121 IEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 179
Query: 321 YDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKK 142
+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+ AD +EA+YKK
Sbjct: 180 FKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKK 239
Query: 141 AHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERK 31
H AIRADP+ K KK+ KR+N +KLT +RK
Sbjct: 240 VHAAIRADPT-MAKSTKKEPATHKRYNLKKLTYEQRK 275
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 223 bits (545), Expect = 1e-58
Identities = 106/217 (48%), Positives = 145/217 (66%)
Frame = -1
Query: 681 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 502
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 61 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGN 120
Query: 501 XXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 322
++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G
Sbjct: 121 VEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 179
Query: 321 YDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKK 142
+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+ AD +E++YKK
Sbjct: 180 FKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKK 239
Query: 141 AHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERK 31
H AIRADP+ K KK+ KR+N +KLT +RK
Sbjct: 240 VHAAIRADPT-MAKSTKKEPATHKRYNLKKLTYEQRK 275
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -1
Query: 186 KLGVTADA----IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQ 19
+LG DA ++ + + A+ + KKK+ KK K+K+ K+K ++K KN+
Sbjct: 14 RLGTDLDAYGFRVQVVLQLAYTIFGFEEGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNK 73
>05_04_0084 - 17788077-17789240
Length = 387
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 147 KKAHEAIRADPSHKKKELKKDSVKQKR----WNKRKLTLAERKNKNQAK 13
+ A E + DP K+ +KKD +Q++ W +R+ + ++K + Q+K
Sbjct: 300 RAAGEKVHDDPKLIKESMKKDKKRQQKHAEQWKERQKMVDKQKKERQSK 348
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 108 KKKELKKDSVKQKRWNKRKLTLAERKNKNQAKE 10
KKK+ KK K+K+ NK+K ++K K + K+
Sbjct: 74 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
>04_04_1146 +
31249488-31249722,31250145-31250236,31251158-31251209,
31251377-31251477,31251587-31252020,31252453-31252507,
31252614-31252667,31252774-31253190
Length = 479
Score = 28.7 bits (61), Expect = 4.5
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = -1
Query: 369 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS-LEQDDEDSFKRQFSK 193
VDG +VP + G DA ++ A HR + HV ++ L + D F +
Sbjct: 329 VDGDGSVPVESAKADGLDAVARVGVAADHRGIVCDRHVFRIIQHWLHAGEPDPFYDPLND 388
Query: 192 YIKLGVTADAIEAIYKKAHE--AIRAD---PSHKKKELKK 88
Y+ L TA IE ++K + ++R D SH+ E K+
Sbjct: 389 YVIL-PTAFEIEKYHEKHGDITSVREDWEIISHRDDESKR 427
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 183 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNK 58
LG++ A+EA YK+++E+ A+P KK + +W++
Sbjct: 748 LGLSHYAMEAGYKRSNESTPAEPVPSKKPKVDPVLPASKWSR 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,937,392
Number of Sequences: 37544
Number of extensions: 324298
Number of successful extensions: 1064
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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