Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_D19
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 82 4e-16
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 81 5e-16
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 81 5e-16
04_01_0053 + 551027-553024 29 2.0
09_04_0201 + 15543318-15543488,15543956-15544069 29 3.6
09_02_0445 + 9446171-9447496 29 3.6
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 3.6
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095... 29 3.6
05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695... 28 4.7
04_04_1576 - 34551095-34552645 27 8.2
02_05_0553 - 29918289-29918361,29918505-29918617,29918694-299188... 27 8.2
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/80 (47%), Positives = 50/80 (62%)
Frame = -2
Query: 288 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 109
RLY + GYKR NQ+ENT+L+++EG + + +Y GK YVY+AK ++ GG
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66
Query: 108 RGKKTKLRAIWGKVTRPHGN 49
T R IWGKVTRPHGN
Sbjct: 67 ----TNYRCIWGKVTRPHGN 82
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 81.4 bits (192), Expect = 5e-16
Identities = 38/88 (43%), Positives = 53/88 (60%)
Frame = -2
Query: 312 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 133
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 132 RTPIPGGPRGKKTKLRAIWGKVTRPHGN 49
++ + +R IWGKVTRPHGN
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGN 81
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 81.4 bits (192), Expect = 5e-16
Identities = 38/88 (43%), Positives = 53/88 (60%)
Frame = -2
Query: 312 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 133
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 132 RTPIPGGPRGKKTKLRAIWGKVTRPHGN 49
++ + +R IWGKVTRPHGN
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGN 81
>04_01_0053 + 551027-553024
Length = 665
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = +1
Query: 43 PVVAMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 141
P A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 228 PSKAIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 59 GRVTLPQIARSLVFLPRGPPGIGVLFL 139
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>09_02_0445 + 9446171-9447496
Length = 441
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Frame = +1
Query: 43 PVVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLASIKDCIITVFCS--FNLE 216
P W GH P + F++G G W S ++ + + + CS + L+
Sbjct: 222 PYCGYWHGHGTPPRPRAYVFSSGVDGGWRESDSGSDVELPSLELINFVGRAGCSLYWGLD 281
Query: 217 ESGVLVLVA*TTLISCEYGLCVQPAVAG 300
++ + TT E+ L PA+ G
Sbjct: 282 GKDAMLALHKTT---AEFSLVTIPAIVG 306
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 94 GFFATGTSGNWCPLLSSVHIDAMLA 168
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>04_03_0827 -
20108937-20109046,20109146-20109234,20109400-20109548,
20109801-20109942,20110530-20110645,20111141-20111458
Length = 307
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 101 LPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPR 253
+P+ PPG LA + Q L R+FA T A SC +RR R
Sbjct: 87 VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137
>05_06_0032 -
25067996-25068156,25068746-25068815,25069385-25069532,
25069611-25069726,25069799-25069877,25069960-25070030,
25070139-25070348,25070445-25070453,25070824-25070968,
25071297-25071332,25071428-25071494,25071591-25071624
Length = 381
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 15 VXLELGSDTASSCHVGGSPCPR 80
+ ++ GSD S+CHV G+P R
Sbjct: 313 IFMDCGSDLGSACHVPGNPALR 334
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 141 LCTHRRNACQHKRLHHYGLLLL 206
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
>02_05_0553 -
29918289-29918361,29918505-29918617,29918694-29918801,
29918991-29919206,29919284-29919559,29919720-29919824,
29919925-29920379,29920746-29920940,29921237-29921639,
29922006-29922518
Length = 818
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 112 SPWQKNQAACYLGQGDPPTWQLLAV 38
SP Q+ + LG G PP W LL +
Sbjct: 106 SPQQRERVGEELGDGAPPEWALLLI 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,020
Number of Sequences: 37544
Number of extensions: 316361
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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