Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D18
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    29   0.53 
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    29   0.53 
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   4.9  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    26   6.5  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    25   8.6  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   8.6  

>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 214 K*LIPRNIPYLLIFLALKDSHVSTDLLRNISIIY 315
           K LI +  PY+  FL LKD +  TD++ NI  +Y
Sbjct: 192 KELIKKRQPYIGAFL-LKDENTDTDVITNIDQVY 224


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 518 GLEMNSRVLFGCTFEIGNGVKLLGFVCVSTGDPTMVPFRLKMTGPYLDGMEHTMSQR 348
           GLE   R+ F   + I  G+K LGF+     D  +VP  L   G  ++   H M +R
Sbjct: 454 GLERIERLAFNSRY-IRLGLKRLGFIIFGNDDSPVVPLLLYNPGK-INAFSHEMLKR 508


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 222 QLFIFCVFYYLATFSSLCVLK*CELPIKHGAQ*NCKVALENKN 94
           ++++FC   Y      LC L  C LP+K   + N  V+LEN N
Sbjct: 109 EIWLFCRLGY-----PLCALFNC-LPVKQKLEVNSSVSLENTN 145


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = +2

Query: 395 SSNERAPL*GPLSIRRQTPTILRHCQSQKCTQTKHDYSSLNPAKILQQP---------NA 547
           S  +++P  GPL       T +    +   +   HD+SSL P    ++P         N+
Sbjct: 46  SLTQQSPF-GPLDQSSSRRTFMYIVATLNASYPDHDFSSLQPTDFYKEPSLSRVVDSVNS 104

Query: 548 RLFKISMGYISIR*NSLITFLFRLMVLRSCIILS 649
            L  I  G +S+  N +   + R + L  C + S
Sbjct: 105 TLNNIGRGRLSV--NGIWEIIDRHINLSDCSVYS 136


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 485 CTFEIGNGVKLLGFVCVST 429
           C F +G+ + +LGF C  T
Sbjct: 17  CNFILGSSIPVLGFYCADT 35


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = +1

Query: 388  PVIFKRKG------TIVGSPVDTQTNPNNFTPLPISKVHPNKT 498
            PV+  R G      TI    +   T+P N TPL +  V PN T
Sbjct: 947  PVVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTPNDT 989


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,480
Number of Sequences: 5004
Number of extensions: 71874
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)