Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D18
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine rece...    28   8.0  
U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine rece...    28   8.0  

>Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical
           protein W08D2.3b protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 255 LSFERFSCKYRPSS*HFNNLHPYFKWSIFITALRHSVL 368
           LS+   +C    SS H  NLH  F  SIF+ A+ HS L
Sbjct: 52  LSYSHSACYSMISSAHLFNLHFAFNGSIFLGAVFHSNL 89


>Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical
           protein W08D2.3a protein.
          Length = 562

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 255 LSFERFSCKYRPSS*HFNNLHPYFKWSIFITALRHSVL 368
           LS+   +C    SS H  NLH  F  SIF+ A+ HS L
Sbjct: 55  LSYSHSACYSMISSAHLFNLHFAFNGSIFLGAVFHSNL 92


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/66 (24%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
 Frame = -1

Query: 343 MKIDHLKYGCKLLKCYEEGRYLHENLSKLRKLGGRECC-AESTI--YFLCILLFGNVLVF 173
           +++D   Y  +L    E   +L++ L +L ++G  E    +++I  YF+ +++FG++++F
Sbjct: 684 LRLDFTYYHKELKAASESVTFLNKFLDELFEMGRHETIWIQNSIPWYFIVLIIFGSLVLF 743

Query: 172 VCTKIV 155
           +   I+
Sbjct: 744 IILLII 749


>Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC455.11 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
 Frame = +1

Query: 40  TISNFYLLIFFQTEPILLIFIL--QCDFT---ISLCTMFDG*LTLF*YTQRRERCQIVKY 204
           TISNF + IF  T  I+   +L   C+F    +  C  F   LT   +       +I+ Y
Sbjct: 124 TISNFPIYIFLITTSIVCNTVLFKVCNFQFERVDGCASFYCSLTTC-FQSYAVITRII-Y 181

Query: 205 TKNK*LIPRNIPYLLIFLALKDSHVSTDLLR-NISIIYIHISNGRFSLL 348
           T    +    +   LIFL+ K + +S+DL + N+  +   IS   F LL
Sbjct: 182 TSTNIVFSTILSIQLIFLSCKSTKISSDLQKANLLSLTDAISTFIFDLL 230


>U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform b protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 95  FLFSNATLQFHCAPCLMGNSHYFSTHKD 178
           F+  NAT+  HC  CL  +SHY  T KD
Sbjct: 323 FVALNATI--HCLICLTVSSHYRKTVKD 348


>U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform a protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 95  FLFSNATLQFHCAPCLMGNSHYFSTHKD 178
           F+  NAT+  HC  CL  +SHY  T KD
Sbjct: 282 FVALNATI--HCLICLTVSSHYRKTVKD 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,668,123
Number of Sequences: 27780
Number of extensions: 398533
Number of successful extensions: 972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)