Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D16
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   3.9  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   5.1  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   9.0  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 213 YCCNVNNILLYDL--LNASTKKSRVNYNPRNPSFFCEICN 326
           YC + +N+  YD   L +  K++R NY+ +N  F C +C+
Sbjct: 232 YCDHCSNVYHYDCSPLPSLNKETR-NYSQQN-GFICPLCS 269


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 596 HTAKVIHLSENLRSVL*TTRFIKTAFEIKGFIDKLR 489
           H A+V HLS +   VL +  +  T F+ K F D+ R
Sbjct: 309 HAARVNHLSLSTEHVLRSGAYDHTDFKPKSFSDERR 344


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 147 YLCAIFFVLLWTSLFVLYPFFF 82
           +L   FF+ + T+LFV +P FF
Sbjct: 248 FLINSFFINVQTNLFVYHPHFF 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,467
Number of Sequences: 5004
Number of extensions: 44959
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)