Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D15
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...   104   5e-23
L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protei...    31   0.59 
L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protei...    31   0.59 
AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell...    31   0.59 
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    28   4.2  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score =  104 bits (249), Expect = 5e-23
 Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
 Frame = -1

Query: 438 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXL 262
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ RL               
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61

Query: 261 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEKVGNNTRVWEASSYV 82
           +DY  PFP+S++VL +C  SYFI MGIL +Y  + EK     A E  G  +R W  SS +
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121

Query: 81  KKHDDKYNLVIVMRDTNGNTREASVTK 1
           K HDDKY L    +   G + +  +TK
Sbjct: 122 KAHDDKYTLSAEFK-KEGRSGQGKITK 147


>L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -3

Query: 196 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHXR 17
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 16  GIRD 5
           G  D
Sbjct: 120 GDDD 123


>L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -3

Query: 196 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHXR 17
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 16  GIRD 5
           G  D
Sbjct: 120 GDDD 123


>AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell
           lineage protein 39 protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -3

Query: 196 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHXR 17
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 16  GIRD 5
           G  D
Sbjct: 120 GDDD 123


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 30  HSCLA*QLRDCIYHRVSSHKNWLPRPW 110
           HS L  QL+  + +R  +HKNWL   W
Sbjct: 50  HSELGAQLQSALENRAKNHKNWLEDWW 76


>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 7   HGCLAXVAIRVSHNNYEIVFIIVFLHIRTGFPDPGVISNLLLGYH 141
           HG  A + I     NY  +  I+  H  T   DP V+SNL  G H
Sbjct: 826 HGVYASILIE-DKTNYPTLVSIITTHGGTIVVDPKVLSNLNQGSH 869


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,917
Number of Sequences: 27780
Number of extensions: 248522
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)