Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D15
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   6.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   6.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 54   RDCIYHRVSSHKNWLPRPWCYFQPSPWLP-QRCP 152
            R  +   + SH  W PR   Y + +   P +RCP
Sbjct: 1669 RGTVIRSIRSHSTWDPRRHMYEELNHCAPNRRCP 1702


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   LVTDASRVLPFVSRITITRLYLSSCF 79
           L++  +  LP +S +    +YL +CF
Sbjct: 266 LMSSTNAALPKISYVKSIDVYLGTCF 291


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   LVTDASRVLPFVSRITITRLYLSSCF 79
           L++  +  LP +S +    +YL +CF
Sbjct: 266 LMSSTNAALPKISYVKSIDVYLGTCF 291


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   LVTDASRVLPFVSRITITRLYLSSCF 79
           L++  +  LP +S +    +YL +CF
Sbjct: 205 LMSSTNAALPKISYVKSIDVYLGTCF 230


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 132 KEKVGNNTRVWEASS 88
           +E+ G+N  VWEA++
Sbjct: 24  EEETGSNLPVWEAAA 38


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 132 KEKVGNNTRVWEASS 88
           +E+ G+N  VWEA++
Sbjct: 24  EEETGSNLPVWEAAA 38


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 453 YNMSETAEAAKINKWDGAAAKNAVDDAIREVMTGDLK 343
           + + E     +IN  D    +N  D  ++ ++TGD K
Sbjct: 119 HELKEKHLTQRINSCDLLKKRNENDPFLKRLITGDEK 155


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 132 KEKVGNNTRVWEASS 88
           +E+ G+N  VWEA++
Sbjct: 24  EEETGSNLPVWEAAA 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,250
Number of Sequences: 438
Number of extensions: 3393
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)