Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_D12
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 118 2e-28
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 116 8e-28
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 29 0.20
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 1.8
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 1.8
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 1.8
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 2.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 4.3
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 24 5.6
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 5.6
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 24 7.5
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 7.5
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 23 9.8
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 23 9.8
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 23 9.8
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 118 bits (285), Expect = 2e-28
Identities = 53/92 (57%), Positives = 69/92 (75%), Gaps = 2/92 (2%)
Frame = -1
Query: 274 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGIWXC--K 101
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 100 RCKRTVAGGAWXFSTTAAAAMQEXLDRRLREV 5
CK+ +AGGAW +T AA + + + RRLRE+
Sbjct: 61 GCKKVLAGGAWTVTTAAATSARSTI-RRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 116 bits (280), Expect = 8e-28
Identities = 53/92 (57%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Frame = -1
Query: 274 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGIWXC--K 101
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 100 RCKRTVAGGAWXFSTTAAAAMQEXLDRRLREV 5
C +T+AGGAW +T AA + + + RRLRE+
Sbjct: 61 GCSKTLAGGAWTVTTAAATSARSTI-RRLREM 91
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.1 bits (62), Expect = 0.20
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 81 ATVLLHRLQXQMPTQXRFIASLPQNEQVYFACWVTS 188
+T +L ++ Q+ T F+A + +NE +FA W TS
Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 178 QHAKYT-CSFCGKDAMKRXCVGIWXCKRCKR 89
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 191 LFDHFT*RGTVTCAIFASNSNLFGT 265
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 1.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 226 VCHICQ*FQPFWYVWPF 276
+ ++ Q FQ WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 2.4
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 87 VLLHRLQXQMPTQXRFIASLPQNEQV--YFACWVTSIFLTILRREAP*RVPYLPV-IPTF 257
+L +L Q+PT R AS+P QV YF + +A ++P LPV +P +
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQVRDYFIEHYYPLIENARTEDA--KIP-LPVSLPWY 88
Query: 258 LVRLAILVNLSDTKVDREKKKHRPAEFI 341
+A ++++S + + EF+
Sbjct: 89 PDGMAFMLDISKEVIRKSPHLKALQEFL 116
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 189 IFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 287
I L I + P Y+P++P L RL L N+
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERLKSLQNM 285
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 5.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 294 YRRGLPKWPNVPKRLELL 241
YR+ LP P++P R+E L
Sbjct: 427 YRKRLPHSPSMPSRVEFL 444
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 129 RFIASLPQNEQVYFA 173
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 7.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 287 EVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLL 156
EV ++GQ Y + W + T ++T + +P R VYL+
Sbjct: 178 EVIRDGQEYNVMADIWSLGITAYEIATGSPPHAKEDPFRAVYLI 221
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 117 PTQXRFIASLPQNEQVYFACWVTSIFLTI 203
P Q +F+ +NE +Y A TSIF ++
Sbjct: 253 PCQLKFLKLKFENEILYTAMHTTSIFKSV 281
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 143 GCYETXLCRHLXL*AMQEDCSRRSLGILH 57
G + LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 23.4 bits (48), Expect = 9.8
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 335 FGRPM-LFFFSVNFCIGEVYQN 273
FG M LF+FS N + +VYQN
Sbjct: 448 FGYGMVLFYFSANNYLIDVYQN 469
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = -1
Query: 169 KYTCSFCGKDAMKRXCVGIWXCKRCKRTVA 80
KY C CG + C I RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,103
Number of Sequences: 5004
Number of extensions: 28291
Number of successful extensions: 81
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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