Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_D12
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 123 4e-29
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 122 1e-28
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.9
07_01_0385 - 2871628-2872131 27 3.9
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776 27 5.1
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 6.7
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575... 26 6.7
02_01_0679 - 5048653-5051394 26 6.7
01_03_0177 + 13470784-13471609,13472263-13472423,13472575-134727... 26 6.7
07_03_1237 + 25073010-25073513 26 8.9
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 123 bits (296), Expect = 4e-29
Identities = 55/90 (61%), Positives = 68/90 (75%)
Frame = -1
Query: 277 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGIWXCKR 98
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 97 CKRTVAGGAWXFSTTAAAAMQEXLDRRLRE 8
C + AGGA+ +T +A ++ + RRLRE
Sbjct: 85 CGKVKAGGAYTMNTASAVTVRSTI-RRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 122 bits (293), Expect = 1e-28
Identities = 55/87 (63%), Positives = 66/87 (75%)
Frame = -1
Query: 268 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGIWXCKRCKR 89
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 88 TVAGGAWXFSTTAAAAMQEXLDRRLRE 8
AGGA+ +T +A ++ + RRLRE
Sbjct: 93 VKAGGAYTMNTASAVTVRSTI-RRLRE 118
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 187 EVTQHAKYTCSFCGKDAM 134
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 166 YTCSFCGKDAMKRXCVGIWXCKRCKRTVAGGAW 68
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
Length = 80
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -1
Query: 313 FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 167
+ L ++ + + K + G+T + +RY LR+ ++K+EV K
Sbjct: 11 YELEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 309 LCQLLYRRGLPKWP 268
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>11_01_0699 -
5757410-5757458,5757760-5757831,5758084-5758152,
5758329-5758477,5758568-5758699,5758784-5759109,
5759330-5759399,5759684-5759738,5760322-5760377,
5760500-5760700,5761466-5761651,5761756-5761906,
5761978-5762206,5762321-5762582,5762858-5762959
Length = 702
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 264 RLAILVNLSDTKVDREKKKHRPAEF 338
RLA +NLSDT+V++E H + F
Sbjct: 342 RLASHLNLSDTQVNQEAYHHNGSSF 366
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 303 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 184
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>01_03_0177 +
13470784-13471609,13472263-13472423,13472575-13472785,
13473092-13473161,13489257-13489410,13489532-13489777
Length = 555
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 335 FGRPMLFFFSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRC 216
FG +L S +G +G++Y+ WQ+W RC
Sbjct: 445 FGILVLEIISGKRAVGSYKLSGRSYELRRYAWQLWKEERC 484
>07_03_1237 + 25073010-25073513
Length = 167
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 133 KRXCVGIWXCKRCKRTVAGGAWXFSTTAAAA 41
KR G+ C C RT++GG++ + AA
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAA 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,136
Number of Sequences: 37544
Number of extensions: 187704
Number of successful extensions: 416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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