Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_D08
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1029 + 22419046-22419331,22419430-22419461 34 0.096
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 32 0.39
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 1.2
07_03_1137 - 24220597-24220619,24220694-24221414,24221513-242217... 29 2.7
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 29 3.6
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340... 29 3.6
01_05_0156 - 18698375-18698596 29 3.6
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386 28 4.8
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 28 4.8
08_02_0009 + 11216532-11218687,11220727-11225998 28 6.3
08_02_0003 + 11180421-11180757,11180773-11185715 28 6.3
08_02_0002 + 11173365-11173512,11173528-11178470 28 6.3
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 27 8.3
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496... 27 8.3
>10_08_1029 + 22419046-22419331,22419430-22419461
Length = 105
Score = 33.9 bits (74), Expect = 0.096
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -2
Query: 336 DVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSA 172
D V E R++ + E I+R R C E +H KCR L D+Y A
Sbjct: 25 DPVAMLEYREHLVREKWIQIETAKIIRDRLRWCYRIEGVNHHQKCRHLVDQYLEA 79
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 282 DSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYGDL 139
D +ILS+LR D + PD A S+W A+F+ GDL
Sbjct: 320 DPQILSVLRANDADGLQLLLPDAAAAGDSVWVPVPPDPSAFFVNVGDL 367
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = -2
Query: 450 DAPVTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEI 271
D P T +QK+Y ++ RV ID ++ +VCD E ++++
Sbjct: 550 DKPRNHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDE 609
Query: 270 LSILRQRYE 244
+ + + YE
Sbjct: 610 VETINEEYE 618
>07_03_1137 -
24220597-24220619,24220694-24221414,24221513-24221731,
24221805-24222505,24223127-24223376
Length = 637
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 22 LXLAFIAHFVRSCSGXIASFPDHAMLLLH 108
L L I HF++SC ++ H MLL+H
Sbjct: 157 LQLEMIHHFLKSCENWLSVEGQHNMLLMH 185
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 189 DKYKSAEEAWFIKYGDLGAYGDARKAY 109
D ++ E+W +KY D Y DA+ AY
Sbjct: 341 DAKHASNESWPLKYDDYFPYADAKNAY 367
>05_01_0429 +
3399266-3399708,3401320-3401382,3403919-3404345,
3404863-3405141
Length = 403
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 282 DSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYGDL 139
D +ILS+LR + + PDH K +W + S A F+ GD+
Sbjct: 264 DPQILSLLRANDVEGLQVFVPDHEGK--EMWVQVPSDPSAIFVNVGDV 309
>01_05_0156 - 18698375-18698596
Length = 73
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 171 EEAWFIKYGDLGAYGDARKAYMKQKHRMVWERR 73
EEA ++ G G+ GDAR K + R +W RR
Sbjct: 22 EEAPAMRTGRGGSDGDARDVEEKLRRRSIWTRR 54
>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
Length = 837
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 118 SRITISTEVTIF-NEPSFLSRLVLVPKRPAFSCMVWLLIHHAIFIALPENA*YLRVHCPV 294
S+I TE+ F NE + LS+++ F C + + ++ +P + R+H V
Sbjct: 527 SKIVEQTEIDQFINEVAILSQIIHRNVVKLFGCCLESEVPLLVYEFIPNGTLHDRLHTDV 586
Query: 295 SFKLSIS 315
S K S+S
Sbjct: 587 SVKSSLS 593
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 118 SRITISTEVTIF-NEPSFLSRLVLVPKRPAFSCMVWLLIHHAIFIALPENA*YLRVHCPV 294
S+I TE+ F NE + LS+++ F C + + ++ +P + R+H V
Sbjct: 371 SKIVEQTEIDQFINEVAILSQIIHRNVVKLFGCCLESEVPLLVYEFIPNGTLHDRLHTDV 430
Query: 295 SFKLSIS 315
S K S+S
Sbjct: 431 SVKSSLS 437
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -2
Query: 423 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 244
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 1524 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 1583
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -2
Query: 423 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 244
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 808 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 867
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -2
Query: 423 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 244
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 745 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 804
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 19 YLXLAFIAHFVRSCSGXIASFPDHAMLLLHVSFSRITISTEVTIFNEPSFLSRLVLV 189
YL +A +AH + +F DH +L L ++ IS + + +++ +F+ L ++
Sbjct: 529 YLAIAMLAHADKDVLMVPYAFTDHYILFLIYPKDQLIISLDPSHYDKETFMEFLTIL 585
>10_02_0074 -
4965688-4966638,4966877-4966906,4968656-4968927,
4969092-4969329
Length = 496
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -2
Query: 447 APVTWFRETVVEPNQKKYP--WYHQ 379
APV W + + +P++ +YP WY+Q
Sbjct: 269 APVPWCADCMAQPDRIEYPAVWYNQ 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,674
Number of Sequences: 37544
Number of extensions: 291666
Number of successful extensions: 754
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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