Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D07
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    29   0.50 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   3.5  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 107 FLCQPFHIKSIQFQYI*NENKIKQQHLLRSIFHFHSEASISLSYGYHHHIHTRQMYNMTY 286
           FL + F + S  F    N N+ +   L  S    H+EA I+++Y + +   +R   N+  
Sbjct: 581 FLPEDFFLMSEYF----NLNEFEANALQESELASHAEAEINITYKFDNFSESRPRLNILN 636

Query: 287 DCLF 298
           +C F
Sbjct: 637 NCSF 640


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 415 MKLLNIYFIDLCFPLLWES*FGLNYLFI---LCINLY*CLNVKQTIISHVVHLSCMYMMV 245
           M+L N  F  LC PL++ +    NY F+   LC  L   L+     IS  + L  M +  
Sbjct: 144 MRLWNAAFGTLCIPLVYFTALNFNYSFLAATLC-TLMVALDNHLATISRFILLDSMLLFF 202

Query: 244 V 242
           +
Sbjct: 203 I 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,561
Number of Sequences: 5004
Number of extensions: 45791
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)