Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_D02
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 190 2e-49
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 3.6
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 6.3
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 6.3
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.4
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 8.4
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 8.4
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 8.4
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 190 bits (463), Expect = 2e-49
Identities = 89/193 (46%), Positives = 130/193 (67%), Gaps = 2/193 (1%)
Frame = -3
Query: 606 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 427
++L ++V+C+SN NRSMEAH L G+ V S+GTG V+LPG S D+PN Y+FG YDE
Sbjct: 5 TNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDE 64
Query: 426 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 247
IY +L +D YT NGLL MLDRNRRIK P ++Q + ++++ITCEER YD + E
Sbjct: 65 IYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDL 124
Query: 246 GSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDD-LDNDIDELLHEFESK 70
R N+PV+++N+DI+DNHEEA++G I D+V K+ ++ D L+ ++ +F+S
Sbjct: 125 YRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSN 184
Query: 69 CHR-PILNWIMFY 34
+ P+L I F+
Sbjct: 185 HPKLPVLYTIHFF 197
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -3
Query: 300 DVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLI-SDMVTKMAQ 124
+V++ E R+ + + +GS YN V ++ QD H I A L+ + A
Sbjct: 993 EVLLEKEIRLLYRAMIRYGSLEHRYNDIVKYADLTTQDAHVIKKIAADLVTASRKAVSAA 1052
Query: 123 SDDLDND 103
DL ND
Sbjct: 1053 EKDLSND 1059
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -3
Query: 234 SIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESK 70
+I Q + +++IQD+ + L+ D+ + Q D+L++ I+ L + E K
Sbjct: 11 TILGQKRELEDVEIQDDDIQEVSKEDLLKDVRVRSIQFDELESKIEGLQNLAEEK 65
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 381 NGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 226
N L+ LD N + K PEK + R+ C VYD ++ + RS +
Sbjct: 513 NDLVRSLDENLKTKSGPEKLYLIMARY-----CLRCVYDDKMDSLWNSRSFW 559
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 474 SADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGL 373
S D+ N ++F + +DE L + N++ N L
Sbjct: 587 SNDKQNTHDFQISHDENLIQLFNDESNFFNLNDL 620
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 474 SADRPN--CYEFGVLYDEIYNDLMEKDKN 394
SA +PN C +G D+IY D+M + N
Sbjct: 316 SAKQPNDACSLYGSRIDDIYRDIMPPNNN 344
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +3
Query: 84 RVVIHLYHCPNHRFEPFLLPYHLLKMHQSLLLRDYP 191
++++H+ +F+P++L +H K+ Q +R P
Sbjct: 221 KLILHINGIKKDQFDPYMLLFHAFKVPQWKHIRIRP 256
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 250 PFNYLIIYSFFTSYYDIKSFITHLKFF 330
PF+YLI+Y FF ++ +T L FF
Sbjct: 344 PFSYLILYYFFLDISKLQ--MTSLTFF 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,350
Number of Sequences: 5004
Number of extensions: 55225
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -