Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_D01
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0361 - 43058132-43058164,43058309-43058374,43058712-430587...    28   5.9  
08_02_1562 - 27881885-27881962,27882801-27882887,27883971-278840...    27   7.8  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    27   7.8  

>01_07_0361 -
           43058132-43058164,43058309-43058374,43058712-43058794,
           43058902-43059014,43059311-43059428,43059935-43060040,
           43060128-43060205,43060322-43060372,43060461-43060521,
           43060991-43061115,43061671-43061760,43061886-43061965,
           43062060-43062489
          Length = 477

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 325 PPGFKWLPGPIDINIKTVTHVE 390
           PPG+ WLPG  D + K + H+E
Sbjct: 79  PPGYHWLPGFGDGSNKWLLHLE 100


>08_02_1562 -
           27881885-27881962,27882801-27882887,27883971-27884048,
           27884100-27884267,27884353-27884465,27885360-27885684
          Length = 282

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 522 PMRESNPRPATVGAANYCTTEP 457
           P+R   PRP  V A+ +CT  P
Sbjct: 24  PVRRRVPRPPLVAASRHCTASP 45


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 436  SCSTLDDWLGGAIVS---SPDCCGSWVRFPHRAN 528
            SC  ++  LGG I +   S +C GS V+ P R+N
Sbjct: 1898 SCFEMNTMLGGQIFAFGPSDECAGSQVQQPQRSN 1931


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,146
Number of Sequences: 37544
Number of extensions: 236239
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)