Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C24
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796...    30   1.2  
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792...    27   8.2  

>12_01_1064 -
           10978039-10978190,10978731-10978865,10979217-10979605,
           10979669-10979892,10980011-10980172,10980256-10980906,
           10981583-10981804
          Length = 644

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 547 SAGRSIRAHGARAQGPHSQGAQKDRQFLSHVYSQXIFVRHITLFS-QISNQKVFTR 383
           S G + R+  ARA G   QGA K R    H   Q   V+H+ L     +   VFTR
Sbjct: 33  SEGPTTRSKRARADGGSQQGAAKKR---GHKNQQDRAVKHVALVEPPATKHSVFTR 85


>06_03_0038 -
           15778446-15778577,15778685-15779020,15779106-15779225,
           15779280-15779765,15779861-15779994,15780111-15780230,
           15784881-15785018,15785404-15786079,15786179-15786340,
           15786424-15786618,15786839-15787084,15787758-15787952
          Length = 979

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 547 SAGRSIRAHGARAQGPHSQGAQKDRQFLSHVYSQXIFVRHITLFS-QISNQKVFTR 383
           S G + R+  ARA G   QGA K R        Q   V+H  L     + Q VFTR
Sbjct: 24  SEGPTTRSKRARADGGSQQGAAKKR---GRKNQQDRAVKHAALVEPPATKQSVFTR 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,283,951
Number of Sequences: 37544
Number of extensions: 208869
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)