Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_C23
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 45 1e-05
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 42 9e-05
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 42 1e-04
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 38 0.001
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 36 0.006
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 32 0.073
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 31 0.22
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 30 0.30
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 30 0.39
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 29 0.52
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 28 1.2
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 2.8
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 3.6
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 4.8
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 4.8
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.4
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 6.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.4
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 8.4
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 45.2 bits (102), Expect = 1e-05
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = -2
Query: 645 TVVCKHWLRGLCKKGDQC 592
+VVCKHWLRGLCKKG+QC
Sbjct: 51 SVVCKHWLRGLCKKGEQC 68
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 529 CINYLAGFCPDGASCKFMHPRF-ELPAPPDQPKD 431
C YLAGFCP G +C HP+ E P PP + KD
Sbjct: 136 CPKYLAGFCPLGPNCPDAHPKHSEPPHPPQKRKD 169
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 720 CEFYXQPGGCGNGAQCPYRHVRGDRTV-VCKHWLRGLCKKGDQC 592
C FY + G C NG +C Y H+ + V VC + G C G C
Sbjct: 82 CHFYAERGWCSNGEECLYLHLDPSKQVGVCAWYNMGFCPLGPIC 125
Score = 32.3 bits (70), Expect = 0.073
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -1
Query: 532 LCINYLAGFCPDGASCKFMHPRFELPAPPDQPKDAKRLPVCHSCSEVGHKASSCPKIPPD 353
+C Y GFCP G C+ H R P P A P+ +C + H S P PP
Sbjct: 110 VCAWYNMGFCPLGPICRGKHVRKPRPCPKYL---AGFCPLGPNCPD-AHPKHSEPPHPPQ 165
Query: 352 QRE 344
+R+
Sbjct: 166 KRK 168
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 532 LCINYLAGFCPDGASCKFMHPRFELPAPPDQPKDAKRLPVCHSCSEVG 389
+C ++L G C G C F+H + L K++P CH +E G
Sbjct: 53 VCKHWLRGLCKKGEQCDFLH-EYNL----------KKMPPCHFYAERG 89
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 41.9 bits (94), Expect = 9e-05
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 732 TAAVCEFYXQPGGCGNGAQCPYRHVRGDRTVVCKHWLRGLCKKGDQC 592
+A C +Y G CG GA C + H R +C +L G C K + C
Sbjct: 205 SAVYCRYYNANGICGKGAACRFVH-EPTRKTICPKFLNGRCNKAEDC 250
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 720 CEFYXQPGGCGNGAQCPYRHVRGDRTVVCKHWLRGLCKKGDQCMTEASAAMDHTVVTGT 544
C+F+ G C G CP+ H +CK++L+G CK G +C + + + GT
Sbjct: 47 CKFFRN-GTCTAGENCPFSHSLETERPICKYFLKGNCKFGPKCALSHALPGNTNLPNGT 104
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 38.3 bits (85), Expect = 0.001
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Frame = -1
Query: 505 CPDGASCKFMHPRFELPAPPDQPKDAKRLPVCHSCSEVGHKASSCPKIPPDQREAAQKQE 326
C G+ C + + +P+ K C++C GH CP P+ R+ A+ +
Sbjct: 32 CTKGSICYNCNQTGHKASECTEPQQEK---TCYACGTAGHLVRDCPS-SPNPRQGAECYK 87
Query: 325 EARYRSLGYV-KPAIEQEDNSGPRLQKIVHKPIEEVTCFKCGAKGHYANKCPKG 167
R +G++ + SG R H+ + C+ CG+ GH A C G
Sbjct: 88 CGR---VGHIARDCRTNGQQSGGRFGG--HR--SNMNCYACGSYGHQARDCTMG 134
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = -1
Query: 442 QPKDAKRLPVCHSCSEVGHKASSCPKIPPDQREAAQKQEEARYRSLGYVKPAIEQEDNSG 263
Q ++ + +C++C++ GHKAS C + P Q + A + + ++ S
Sbjct: 28 QARECTKGSICYNCNQTGHKASECTE--PQQEKTCYACGTAGH---------LVRDCPSS 76
Query: 262 PRLQKIVHKPIEEVTCFKCGAKGHYANKC 176
P P + C+KCG GH A C
Sbjct: 77 PN-------PRQGAECYKCGRVGHIARDC 98
Score = 31.9 bits (69), Expect = 0.097
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 217 CFKCGAKGHYANKCPKGHLAFLSSQ 143
C+ CG GH A +C KG + + +Q
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQ 43
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -1
Query: 442 QPKDAKRLPVCHSCSEVGHKASSCPKIPPDQREAAQKQEEARYRSLGYVKPAIE 281
Q +D C+SC ++GH++ C + Q K + + ++ P IE
Sbjct: 127 QARDCTMGVKCYSCGKIGHRSFECQQASDGQ--LCYKCNQPGHIAVNCTSPVIE 178
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -2
Query: 720 CEFYXQPGGCGNGAQCPYRH---VRGDRTVVCKHWLRGLCKKGDQCMTE 583
C+F+ Q G C +G C + H + ++T+ CK++ +G CK G +C E
Sbjct: 41 CKFFRQ-GTCTSGKNCIFSHDLELATEKTI-CKYFQKGNCKFGSKCALE 87
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 32.3 bits (70), Expect = 0.073
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 529 CINY-LAGFCPDGASCKFMHPRFELPAPPDQPK 434
C N+ ++G C G+ C+F H EL PP PK
Sbjct: 332 CKNWQISGTCRYGSKCQFAHGNQELKEPPRHPK 364
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 30.7 bits (66), Expect = 0.22
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 720 CEFYXQPGGCGNGAQCPYRHVRGD--RTVVC 634
C FY + G C +G +C +HV+ + +T++C
Sbjct: 18 CSFYYKIGACRHGERCSRKHVKPNFSQTILC 48
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 30.3 bits (65), Expect = 0.30
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Frame = -1
Query: 445 DQPKDAKRLPVCHSCSEVGHKASSCPKIPPDQREAAQKQEEARYRSLGYVKPAIEQEDNS 266
+QPK++ S S+ KAS D+R QK++ + YR L + +
Sbjct: 25 EQPKNSSNTNE-ESSSQDNMKASFGSSKRYDER---QKKKRSEYRRLRRINQRNRDKFCF 80
Query: 265 GPRLQKIVHKPIEEVT-----CFKCGAKGHYANKC-PKGHLAF 155
R Q + + E CF+CG+K H N C KG L F
Sbjct: 81 ACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKF 123
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.9 bits (64), Expect = 0.39
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 475 HPRFELPAPPDQPKDAKRLPVCHSCSEVGHKASSCPKIPPDQREAAQKQEEARYRSL 305
H RF+ P + + VC C +GH A CP + Q A + Y+SL
Sbjct: 319 HRRFDCPERINHTMNI----VCRHCGSIGHIARDCP-VRDQQPPMADSTADREYQSL 370
Score = 27.1 bits (57), Expect = 2.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 415 VCHSCSEVGHKASSCPK 365
VC +C VGH+ CP+
Sbjct: 310 VCQNCGNVGHRRFDCPE 326
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 223 VTCFKCGAKGHYANKCP 173
+ C CG+ GH A CP
Sbjct: 334 IVCRHCGSIGHIARDCP 350
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 29.5 bits (63), Expect = 0.52
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 217 CFKCGAKGHYANKCP 173
C++CG KGH+ CP
Sbjct: 185 CYRCGQKGHWIQACP 199
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -1
Query: 532 LCINY-LAGFCPDGASCKFMHPRFELPA 452
+C +Y L G+C G +CKF+H R + A
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLHMREDYKA 216
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 723 VCEFYXQPGGCGNGAQCPYRHVRGD 649
VC+ Y G CG G C + H+R D
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLHMRED 213
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 62 VRSQEA*SNIGFTLILVLFSKVCSSLVLAGEKGEMTFGTF 181
+ ++ A NI + LFS S+L + E GEMT F
Sbjct: 280 IENESADINIAHRPLTTLFSDTDSNLAITNEVGEMTLRIF 319
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 2.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -1
Query: 235 PIEEVTCFKCGAKGHYANKCP 173
P E + C C GH + CP
Sbjct: 83 PSESIVCHNCKGNGHISKDCP 103
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 415 VCHSCSEVGHKASSCPKI 362
VCH+C GH + CP +
Sbjct: 88 VCHNCKGNGHISKDCPHV 105
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 3.6
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -1
Query: 529 CINYLAGFCPDGASCKFMH 473
C+ + G C +G+ C+++H
Sbjct: 117 CLYFARGMCSEGSKCEYLH 135
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -1
Query: 382 ASSCPKIPPDQREAAQKQEEARYRSLGYVKPAIEQEDNSG 263
A+S +PP A S GY PA+ Q SG
Sbjct: 119 ANSSTVLPPRTENALHAASPKPSGSTGYTSPALSQNSGSG 158
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -1
Query: 436 KDAKRLPVCHSCSEVGHKASSCPKIPPDQREAAQKQEEARYRSLGYVKPAIEQEDNSGPR 257
K+ K E HK + ++ +Q +A +K+EEAR + + +ED++
Sbjct: 144 KEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKETFKDDPEEDSN--M 201
Query: 256 LQKIVHKPIEEV 221
I+HK EV
Sbjct: 202 AWSIIHKIKTEV 213
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 436 KDAK-RLPVCHSCSEVGHKASSCPKIPPDQREAAQKQEEARYRS 308
K AK R PV S++ H +C ++ QR+ ++RS
Sbjct: 1589 KSAKQRFPVLEWISKLDHLMDNCIRLNVGQRQQGSSSHSMKFRS 1632
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 235 PIEEVTCFKCGAKGHYANKC 176
P+ TC+KCG H +C
Sbjct: 1800 PVRLSTCYKCGKADHNLREC 1819
>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -2
Query: 354 IKEKQPRSKKKLDTVPWAMLNPQSSK 277
IK+K+P+ ++ PW++++ S+K
Sbjct: 79 IKKKRPKLCSNINLTPWSLIDSTSNK 104
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 235 PIEEVTCFKCGAKGHYANKC 176
P+ TC+KCG H +C
Sbjct: 1800 PVRLSTCYKCGKADHNLREC 1819
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 481 FMHPRFELPAPPDQPKD 431
F HP F+LP+ P P D
Sbjct: 365 FYHPCFKLPSDPTYPSD 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,691
Number of Sequences: 5004
Number of extensions: 63444
Number of successful extensions: 218
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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