Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C22
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    86   2e-18
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    28   0.66 
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   3.5  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 85.8 bits (203), Expect = 2e-18
 Identities = 47/112 (41%), Positives = 64/112 (57%)
 Frame = -3

Query: 354 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAXARVYIVXHQ 175
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK  AR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 174 KMKVKLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERDQKESALP 19
             ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   +  ++ +KE   P
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFP 114


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 168 KVKLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERDQKESAL 22
           K K+    KNK  +  D+  ++ RA  +  T H ++   +E  ++E  L
Sbjct: 519 KEKMEREMKNKNLELADMILERDRARHELETMHRSQRDKQESTERELRL 567


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 162 KLRNHYKNKKYKPLDLRAKKTRAMRKAL---TKHEAK 61
           K  +H KN++Y  L+ + +K     KAL   TKH  K
Sbjct: 32  KRSSHIKNRQYYILEKKIRKLMFAMKALLEETKHSTK 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,508
Number of Sequences: 5004
Number of extensions: 16843
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)