Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C22
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    99   1e-21
U53342-6|AAA96218.1|  466|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      28   2.3  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    28   2.3  
X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    27   4.1  
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    27   4.1  
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    27   7.1  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    27   7.1  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   7.1  
U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    26   9.4  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    26   9.4  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 98.7 bits (235), Expect = 1e-21
 Identities = 57/114 (50%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
 Frame = -3

Query: 363 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAXARVYIV 184
           M K+KC  LR +               L  LRV+KVTGG ASKLSKIRVVRK  AR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 183 XHQKMKVKLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE-----AKXQDEERDQ 37
            +Q  K +LR  Y + KYKP+DLR KKTRA+R+ LT HE     AK Q + R+Q
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQ 114


>U53342-6|AAA96218.1|  466|Caenorhabditis elegans Hypothetical
           protein F01G12.6 protein.
          Length = 466

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 171 MKVKLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERDQKE 31
           M+++ +NH    + K  D   K+ R   + L K   + +D+ +D+KE
Sbjct: 287 MELETQNHVCTNQLKRQDEEMKRVREDSEVLVKKRKELEDQLKDEKE 333


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 144 KNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERDQK 34
           K+K  K +D + K+    ++  +  E +  DEER+QK
Sbjct: 103 KSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQK 139


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 144 KNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERDQK 34
           K+K  K +D + K+    ++  +  E +  DEER+QK
Sbjct: 103 KSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQK 139


>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 162 KLRNHYKNKKYKP-LDLRAKKTRAMRKALTKHEAKXQDEERDQKE 31
           KL+   K KK K   + R  +  A +KA  + EAK  D+E +++E
Sbjct: 344 KLKTVEKEKKEKADEETRKAEEEARKKAEEEKEAKKDDDEEEKEE 388


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 162 KLRNHYKNKKYKP-LDLRAKKTRAMRKALTKHEAKXQDEERDQKE 31
           KL+   K KK K   + R  +  A +KA  + EAK  D+E +++E
Sbjct: 344 KLKTVEKEKKEKADEETRKAEEEARKKAEEEKEAKKDDDEEEKEE 388


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 144 KNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERD 40
           K   ++ +D   K+ R +RKA+TK E     EE++
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKE 302


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 144 KNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERD 40
           K   ++ +D   K+ R +RKA+TK E     EE++
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKE 374


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 144 KNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERD 40
           K   ++ +D   K+ R +RKA+TK E     EE++
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKE 374


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 162 KLRNHY-KNKKYKPLDLRAKKTRAMRKALTKHEAKXQDEERDQKES 28
           +LR+H  K   YK  +++ ++   +++ L  H  K ++ E+ +KE+
Sbjct: 5   QLRSHILKVTSYKLSEIKQRRVTELKEILRVHYEKEKENEKIEKEN 50


>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 180 HQKMKVKLRNHYKNKKYKPLDLRA--KKTRAMRKALTKHEAKXQDEERD 40
           H+ +K + R     K+ +P D +    +T   R+ALT H  + +DE +D
Sbjct: 114 HRLLKSQSRPESPAKQDEPFDEKKYPPQTPLTREALTLHTKRFEDEYKD 162


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 180 HQKMKVKLRNHYKNKKYKPLDLRA--KKTRAMRKALTKHEAKXQDEERD 40
           H+ +K + R     K+ +P D +    +T   R+ALT H  + +DE +D
Sbjct: 414 HRLLKSQSRPESPAKQDEPFDEKKYPPQTPLTREALTLHTKRFEDEYKD 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,564,918
Number of Sequences: 27780
Number of extensions: 95591
Number of successful extensions: 383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)