Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C20
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   7.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.4  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 346 LKYTY*YENICYFYSSKNLRLRIYFENII 432
           L   Y Y N  Y Y+  N   ++Y++N I
Sbjct: 318 LSNNYNYNNNNYKYNYNNYNKKLYYKNYI 346


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 732 TFDFFKARGIL 700
           TFDF+K+RG++
Sbjct: 25  TFDFWKSRGVV 35


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 4   IINHSQKHQTMHIA 45
           ++ H Q+H T+H++
Sbjct: 190 VLGHRQRHSTIHLS 203


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = +2

Query: 17  HKSIRQCTSRFKXTXHVHLARSGXSFHAHLASXANKSY 130
           H ++    S    T H H + +    H H    A+ SY
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSY 453


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -1

Query: 421 QNIFLDVNFWNYKSNKYF 368
           + I +D+  W ++++KY+
Sbjct: 12  RGITIDIALWKFETSKYY 29


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -1

Query: 421 QNIFLDVNFWNYKSNKYF 368
           + I +D+  W ++++KY+
Sbjct: 69  RGITIDIALWKFETSKYY 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,439
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)