Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C19
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    27   2.3  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   6.9  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.9  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   9.2  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -3

Query: 411 LAVNLQKAQMVSMIVALINARGHRSDADDGKLKQIVYFLRPTLPYRLHGTLVGNERVSTD 232
           ++ NLQ A     I+A+I A    +      L  I   LR   PYRL     G+E    +
Sbjct: 258 ISTNLQYAVE---ILAIILANSKEAKLKVCNLNGIDLLLRRISPYRLRDPTQGSEEEMME 314

Query: 231 QTVE---MLLQESSGKS 190
              +    L+QE+ GKS
Sbjct: 315 NVFDCLCSLVQETKGKS 331


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = -3

Query: 774 LCDSILNGPTEEVXQISNKXKGQILHPNLKESTIKDCKTVLTVYISVNSVCWTLINKNDY 595
           + D+IL    +E         G I H NL+E  +     +  V +  N    T++NK D 
Sbjct: 125 ILDAILPPGEKEDHPSGFTAVGHIAHMNLREEWLPYKYIIGKVILDKNPSIETVVNKTDT 184

Query: 594 EVVEWQYYSIDYPEGK 547
              +++ + ++   GK
Sbjct: 185 IDTKFRTFQMEVLAGK 200


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 636 VNSVCWTLINKNDYEVVEWQYYSIDYPEG 550
           +  VC+  +N+++++ +  + YS D P+G
Sbjct: 95  IMEVCFYSVNRSNWDHIRQENYSPDIPDG 123


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 225 VEMLLQESSGKSTGNKHVYVPEEVKNMFRTQNELQKDML 109
           VEM  Q +  +S+       PEE K   R  + L +D+L
Sbjct: 377 VEMAAQSAGNQSSTKSSKEGPEEEKETLRMVDNLTRDLL 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,092
Number of Sequences: 5004
Number of extensions: 58957
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)