Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C17
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941...    28   8.1  

>06_01_1137 +
           9412230-9412378,9412549-9412634,9413417-9413496,
           9413826-9413881,9414038-9414086,9414692-9414841,
           9414993-9415088,9415442-9415555,9415655-9415785,
           9416171-9416408,9416603-9416656,9417100-9417117,
           9417906-9418722,9418797-9418846
          Length = 695

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 26  CFFSSPVNLSVANVNGHCAAVKNXLSKLXSSAIQVTYILK 145
           C FSS  +L+ + V+   A ++  LS L +   +V Y+LK
Sbjct: 411 CHFSSLTSLNCSAVHDKIAQIQKELSDLQTELGRVVYLLK 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,572,731
Number of Sequences: 37544
Number of extensions: 261060
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)