Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C16
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    32   0.062
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    28   1.0  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   4.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   5.4  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   9.5  

>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 31.9 bits (69), Expect = 0.062
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 74  GDHNSGTYPSGPTT--LAPEITQILKTF 151
           GD+ SGT  S PT+  LAP + Q+L TF
Sbjct: 198 GDYTSGTSISNPTSIPLAPSVVQVLSTF 225


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 77   DHNSGTYPSGPTTLAPEITQILKTFILGLYYTPI 178
            D     Y  GPT   PEIT +L+  I   Y  P+
Sbjct: 953  DEGGSFYLCGPTWPLPEITSVLEEVIQSSYDEPV 986


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 353 LFHGKFLFSS*RYFVNYQFLYKIITHQTM 439
           +++ KFLF    +  NY  ++K++ H  M
Sbjct: 330 VYNEKFLFEVGAFESNYDLVFKVVDHDKM 358


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 268 VDVPIRVGSFFFFLENAYFTLSRT-SSTMKVYRRVIKTKYEGFQNLRN 128
           +D P + GSFF+F  +  F +     S  K  R ++   YE  +N  N
Sbjct: 358 LDSPGKSGSFFYFSRDYRFIIKTIHHSEHKFLREILYDYYEHVKNNPN 405


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 160 SLLHADIPSSWKMSVKA*STHFLKKKKNCL 249
           S  H D+ SS K++ K+  T F  ++ NCL
Sbjct: 242 SAQHIDLLSSTKVAAKSQFTLFGSRETNCL 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,456
Number of Sequences: 5004
Number of extensions: 45326
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)