Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C16
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016662-7|AAB66060.1|  561|Caenorhabditis elegans Hypothetical ...    31   0.70 
U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...    28   4.9  
Z77655-7|CAB01133.2|  221|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF098986-6|AAC67427.1|  484|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF003384-5|AAB54239.2|  324|Caenorhabditis elegans Uncoupling pr...    27   6.5  
Z81111-7|CAB03270.1|  342|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81099-5|CAB03190.1|  342|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF016662-7|AAB66060.1|  561|Caenorhabditis elegans Hypothetical
           protein C33C12.8 protein.
          Length = 561

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -2

Query: 220 AYFTLSRTSSTMKVYRRVIKTKYEGFQNLRNFRCQGSRPAWVGTTIVVTGHYLILGGRLS 41
           A+F+L R     K+    +  KY    +L+ F    S P W+ TT    G+ ++LG    
Sbjct: 210 AHFSLQREDYQWKIPYMQMAQKYN--HDLKFFAVPWSAPGWLKTTNSTKGYGILLGTNQD 267

Query: 40  IYARKNTKV*VH 5
            Y +      +H
Sbjct: 268 TYHKSYVTYILH 279


>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 336 MSVTKYCFMVNFYSHHDDIL*ITNFYIKSSLIKLCSVLFRQFY--FCGH 476
           +++T  C M   YS  DD++ +T    +S +I    +   +FY  +CGH
Sbjct: 11  LAITSVCGM---YSKKDDVVELTEANFQSKVINSDDIWIVEFYAPWCGH 56


>Z77655-7|CAB01133.2|  221|Caenorhabditis elegans Hypothetical
           protein C56A3.4 protein.
          Length = 221

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 274 YYVDVPIRVGSFFF-----FLENAYFT-LSRTSSTMKVYRRVIKTKYEGF 143
           Y+V +P+R+ ++FF     F   + F  ++    T+ VYRR+  T  E F
Sbjct: 32  YFVTIPVRITNWFFTNFPVFSSLSLFLFIATVLITLYVYRRLSSTPRESF 81


>AF098986-6|AAC67427.1|  484|Caenorhabditis elegans Hypothetical
           protein C36C9.5 protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 100 KRAYYP-GTGNYANFENLHTWSLLHADIPSSWK 195
           +RAY+   +G      N HT+++LH+ IP S++
Sbjct: 315 QRAYFNLNSGLPCPEHNAHTYNMLHSSIPGSYR 347


>AF003384-5|AAB54239.2|  324|Caenorhabditis elegans Uncoupling
           protein (mitochondrialsubstrate carrier) protein 4
           protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 124 RCQGSRPAWVGTTIVVTGHYLILGGRLSIY 35
           R +G+   W G    +T HY+  G R+  Y
Sbjct: 72  RREGAMALWTGVAPAITRHYIYTGIRMGAY 101


>Z81111-7|CAB03270.1|  342|Caenorhabditis elegans Hypothetical
           protein T01G5.5 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 273 YFRLILIPIWQMS*LLGHDNYMSVTKYCFMVN 368
           YF    +P+W M  +LG  ++  V+ +CF +N
Sbjct: 128 YFDTKFLPLWFMIPILGGVSWTLVSWFCFPMN 159


>Z81099-5|CAB03190.1|  342|Caenorhabditis elegans Hypothetical
           protein T01G5.5 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 273 YFRLILIPIWQMS*LLGHDNYMSVTKYCFMVN 368
           YF    +P+W M  +LG  ++  V+ +CF +N
Sbjct: 128 YFDTKFLPLWFMIPILGGVSWTLVSWFCFPMN 159


>U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical
           protein M60.2 protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 232 FLENAYFTLSRTSSTMKVYRRVIKTKYEGFQNLRNFRCQGSRPAWVGT 89
           +L+  + T + T      +  +    Y+   NL NF+ +   P W GT
Sbjct: 393 YLQGVFNTFTATPMFASAFAYLQSINYKETSNLTNFKTKVLWPLWFGT 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,295,254
Number of Sequences: 27780
Number of extensions: 250876
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)