Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C16
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.040
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 0.040
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 159 PSMKVFKICVISGARVVGPLG*VPLLWSPVTT*Y*VDVYQSMQEKIQK 16
           PS  ++KI    G R+  P    P  WSP      ++  +S Q  +Q+
Sbjct: 494 PSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQR 541


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 367 ISILIMTIFCKLPIFI*NHHSSNYAQFCSDNSIFAVISKL 486
           ++I    +  K PIFI N  ++ +A       IFAVI  L
Sbjct: 90  LAICDFFMMIKTPIFIYNSFNTGFALGNLGCQIFAVIGSL 129


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 229 LENAYFTLSRTSSTMKVYRRVIKTKYEGFQNLR 131
           +EN   T S  SST    RR     +E  QN R
Sbjct: 223 IENESETESNASSTKTKMRRKSGATFEEIQNQR 255


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 286 IKRKYYVDVPIRVGSFFFFLENAYFTLSRTSSTMKVY 176
           I +K   DV   VG +FF   + +F        MKVY
Sbjct: 442 IYQKMVADV---VGDYFFICPSIHFAQLFADRGMKVY 475


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 286 IKRKYYVDVPIRVGSFFFFLENAYFTLSRTSSTMKVY 176
           I +K   DV   VG +FF   + +F        MKVY
Sbjct: 442 IYQKMVADV---VGDYFFICPSIHFAQLFADRGMKVY 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,255
Number of Sequences: 438
Number of extensions: 3363
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)