Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C14
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    42   1e-04
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    31   0.18 
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    28   1.3  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   5.2  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    26   6.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
 Frame = -3

Query: 681 LENRHAYPEFLPDPNPKWRNSLREKL------ERADMLKRRNQIDIPEFYVGSILAVTIA 520
           L+  + +P+ +P P  K   SL EK       E+++  K  ++        G++L V   
Sbjct: 25  LKRPYNFPKPVPGPKHKDVLSLFEKKCRSVLDEQSERFKMFHRSQPNRVRPGAVLLVESY 84

Query: 519 DPH-SQGKTNRFVGICIERKGCGLRAEFTLRNVVDHQGVEVRYDLYDPTIHKIQVLR 352
             + S+   NRF G  +  +  G ++   LRNVV   GVE    +Y P I +I VL+
Sbjct: 85  SKYPSKDSVNRFAGYLLRIRHRGPKSSILLRNVVMGVGVEYLLPIYSPQIKRIVVLK 141


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -3

Query: 306 LPEYSTFSFDMDPE--ILPEGTPVPINPVKVELKPKPWLERWERQELQGISNIEQYLTKK 133
           +PEYS+ S  + P   ++   + +P    +++ +   W E + R  ++GI  I    T K
Sbjct: 347 VPEYSSISTFVPPSNGLMVFTSGIPSVWAEIDHQAMAWCENFRRVLIRGIFAIMDARTSK 406

Query: 132 DKVRRELRKTXLGKI*FDEAIQEND 58
             V   LRK  L +     +  +ND
Sbjct: 407 CTVSLNLRKELLSRAYIQGSSFQND 431


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -3

Query: 339 LDDKLFYLRDALPEYSTFSFDMDPEILP----EGTPVPIN 232
           LDD LF L   +  +S F F + P   P       P PIN
Sbjct: 119 LDDFLFALESVVSHHSRFQFSLTPSTTPPPSSASAPFPIN 158


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 363  ESCVLLDHIDHSVPQLLDDQQHSLE*TQLSIHIL 464
            ESC+L++H D  +  +LD  Q S +  +++ HIL
Sbjct: 1115 ESCILINHAD-ILSSILDYLQVSKDKRRMATHIL 1147


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 729 EKAETSRRRPXKVNPLLENRHAY--PEFLPDPNPKWRNSLREKLER 598
           E   T R++   +  + ENR+    P F   P  KW +   EKLE+
Sbjct: 83  ENVRTVRKQRSSLYHISENRNLVRLPSFTDVPVNKWHSLALEKLEQ 128


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 139  CQILFNIRNSLQ-FLSLPSFKPWFWFKFN 222
            C  +F  +  ++ F    S  PWFWF+ +
Sbjct: 1184 CDAIFEYQELIEAFRETASENPWFWFEID 1212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,672
Number of Sequences: 5004
Number of extensions: 66415
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)