Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_C14
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0787 - 5907355-5907457,5908328-5908461,5908542-5908628,590... 62 4e-10
02_04_0041 + 19177225-19177327,19178322-19178433,19178617-191787... 52 7e-07
12_01_0205 - 1540849-1541245,1541361-1541631,1541964-1542196,154... 31 1.3
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 30 2.3
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706... 29 4.1
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 28 7.1
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 28 9.4
>02_01_0787 -
5907355-5907457,5908328-5908461,5908542-5908628,
5908733-5908924,5909036-5909188
Length = 222
Score = 62.5 bits (145), Expect = 4e-10
Identities = 44/149 (29%), Positives = 70/149 (46%)
Frame = -3
Query: 750 LASLEVTEKAETSRRRPXKVNPLLENRHAYPEFLPDPNPKWRNSLREKLERADMLKRRNQ 571
+ L AE S +P +E+ PD + ++ K E D K R +
Sbjct: 72 MRGLSTVGSAEVSVEEESSDSPGVEHPPRIKFKRPDKTARHIMNILNK-EAVD--KVRGE 128
Query: 570 IDIPEFYVGSILAVTIADPHSQGKTNRFVGICIERKGCGLRAEFTLRNVVDHQGVEVRYD 391
+IP+ G I+ + + P ++ + + GI I R+ G+ F LR +V GVE +
Sbjct: 129 REIPDVQPGCIIQMRLQVPENKRRESTLKGIVIGRRNAGINTTFRLRRLVAGVGVESVFP 188
Query: 390 LYDPTIHKIQVLRVEKRLDDKLFYLRDAL 304
LY P I +I+VL +K KL+YLRD +
Sbjct: 189 LYSPNIKEIKVLDRKKVRRAKLYYLRDRM 217
>02_04_0041 +
19177225-19177327,19178322-19178433,19178617-19178728,
19178992-19179078,19179161-19179279,19180204-19180306
Length = 211
Score = 51.6 bits (118), Expect = 7e-07
Identities = 34/101 (33%), Positives = 52/101 (51%)
Frame = -3
Query: 606 LERADMLKRRNQIDIPEFYVGSILAVTIADPHSQGKTNRFVGICIERKGCGLRAEFTLRN 427
+E AD K + +IP+ G IL + + P + + + GI I R+ G+ F LR
Sbjct: 113 MEAAD--KVLGEREIPDVQPGCILQMRLQVPEKKRRESTLKGIVIARRNAGINTTFRLRR 170
Query: 426 VVDHQGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDAL 304
+V GV+ Y P I +I+VL +K KL+YLRD +
Sbjct: 171 LVAGVGVD-----YSPNIKEIKVLDRKKVRRAKLYYLRDRM 206
>12_01_0205 -
1540849-1541245,1541361-1541631,1541964-1542196,
1542339-1542601,1542739-1542915,1543032-1543212,
1543273-1543392,1543513-1543629,1544586-1544645,
1545103-1545224,1545374-1545541
Length = 702
Score = 30.7 bits (66), Expect = 1.3
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Frame = -3
Query: 675 NRHAYPEFLPDPNPKWRNSL---REKLERADMLKRRNQIDIPEFYVGSILAVTIADPHSQ 505
+R A F+PDPNPK+ N + ++K + + +R E Y L TI + S
Sbjct: 507 DRSAAEFFIPDPNPKYLNKIFITKDKYRQYGLWER-----YAELYPDGDLVFTIGE--SD 559
Query: 504 GKTNRFVGICIERKGCGLRA-----EFTLRNVVDHQGVEVRYDLYDPTIHKIQVLRVEKR 340
+ F ++G G A F L VV +R +L + ++QV+ V R
Sbjct: 560 ISKDWFFAHVTRKQGDGYAATTRQIRFRLERVVADATYTLRVELAAAQMARVQVV-VNGR 618
Query: 339 LDDKL 325
D+ L
Sbjct: 619 ADEAL 623
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 610 FSQGITPFRVRIRQKFGVGMSILQQRIHLXR 702
F+QG + ++ RIR F G S+ QQRI R
Sbjct: 387 FAQGSSVWQQRIRASFAQGSSVWQQRIRAKR 417
>12_02_0738 +
22669557-22669756,22669868-22669916,22670620-22670657,
22670977-22671058,22671146-22671195,22671381-22671847,
22671992-22672155,22672242-22672448,22672554-22672710,
22672858-22672965,22673161-22673234,22673364-22673521,
22673728-22673788,22673858-22673965
Length = 640
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 690 NPLLENRHAYPEFLPDPNPKWRNSLREKLERADML 586
NP + H YP+ P P P W+ L+ + +D +
Sbjct: 497 NPNDVSTHDYPDQAPTPFPDWQQDLQRLMSSSDTI 531
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 228 VKVELKPKPWLERWERQELQGISNIEQYLTKKDKVRREL 112
VK E K LE W+RQ+ + +I + TK +V REL
Sbjct: 433 VKKEKKDSKRLEMWDRQKAKLQEDIAECKTKITQVDREL 471
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 225 KVELKPKPWLERWERQEL 172
K ELKPKP + WE +EL
Sbjct: 312 KSELKPKPRRKNWEEEEL 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,933,795
Number of Sequences: 37544
Number of extensions: 395581
Number of successful extensions: 1073
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -