Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_C12
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 32 0.49
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 32 0.49
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 29 2.6
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 29 2.6
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 3.5
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 28 6.1
U70844-6|AAQ91891.1| 119|Caenorhabditis elegans Hypothetical pr... 28 8.0
U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical pr... 28 8.0
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 28 8.0
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 413 TCPR*VCGEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSG 544
TCP + E+ SG+H + G RH++ R +AYP D G
Sbjct: 150 TCP--ILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRG 191
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 413 TCPR*VCGEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSG 544
TCP + E+ SG+H + G RH++ R +AYP D G
Sbjct: 150 TCP--ILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRG 191
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
protein R09E10.7 protein.
Length = 1717
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 318 VLWYIVISLVTSGHWSWTS 374
+LW+ + LV SGHW+ TS
Sbjct: 436 LLWWYITKLVQSGHWAQTS 454
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 542 QNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPA 363
Q +S EG+ + +H D Q P P + P RR+ + Y RGGP
Sbjct: 800 QRRLSKFEGSIQNLRAATSTQHLDSMQQLHFPMPDYEPPQPPQQRRRTESSGY--RGGPP 857
Query: 362 P 360
P
Sbjct: 858 P 858
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 286 RHGAATCPGASARAGTSRH*PRTSG 212
RHG CPG R G+ H PR G
Sbjct: 356 RHGPPHCPGRHGRHGSRSHSPRGHG 380
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 503 DEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGG 369
+E P+ D Y + R P+H +GD + RS P Y GRGG
Sbjct: 111 EEEPFSDTDYRVNRR-RRLSPSHD--DGD-FDPRSKRPYYGGRGG 151
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -1
Query: 548 RYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGG 369
R+Q+ G R+ P+ ++ +D+R P + P G +S RSP YS
Sbjct: 171 RHQSPEGSRYGHRQRSISPFRNQQFDQRNSRRDNYPRNQSPRGSRHS-RSPINQYSDERN 229
Query: 368 PAP 360
+P
Sbjct: 230 RSP 232
>U70844-6|AAQ91891.1| 119|Caenorhabditis elegans Hypothetical
protein ZK154.6b protein.
Length = 119
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 464 RARRSGGRHREAHRNVAYP--PPL 529
RARR+G R R N+AYP PPL
Sbjct: 92 RARRAGRRPRNETDNIAYPSAPPL 115
>U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical
protein ZK154.6a protein.
Length = 148
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 464 RARRSGGRHREAHRNVAYP--PPL 529
RARR+G R R N+AYP PPL
Sbjct: 121 RARRAGRRPRNETDNIAYPSAPPL 144
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform a protein.
Length = 1256
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 503 DEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYS 381
++P + H DE Q E+P P + + + +R P+P+ S
Sbjct: 414 EQPNFRSYHNDEPTQ-EQPNPRYQRSSSNFMQQRDPSPVRS 453
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,442
Number of Sequences: 27780
Number of extensions: 336689
Number of successful extensions: 1011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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