Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C07
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    29   2.7  
AC024211-4|AAP82631.1|  487|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC024204-1|AAF36040.3|  414|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
            (tbp-associated transcriptionfactor) family protein 2
            protein.
          Length = 1086

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 691  RTCELPSDQPLPSVRLIKPTAITQTPSSA*KAFSSTNSSDSAQNT-RGFSKCTASRITS 518
            R  EL   +  PS+R + P  + QTP +    F S N++++A+   R +  CT S I S
Sbjct: 955  RILELAELEQDPSIRRMIPRLLAQTPPT---IFGSENAANTAETAERLWKLCTNSSIDS 1010


>AC024211-4|AAP82631.1|  487|Caenorhabditis elegans Hypothetical
           protein Y76B12C.6 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 321 LPTSADCQIPHTPRATYA-RVPVGGSA 398
           LP SADC+  ++PR  +   VP GGSA
Sbjct: 238 LPQSADCRNTYSPRVGHMYGVPPGGSA 264


>AC024204-1|AAF36040.3|  414|Caenorhabditis elegans Hypothetical
           protein Y73B6A.1 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +2

Query: 365 HLRAGTRR---RFGTRPEK--KSSSLNSIPKQTARREVSSMSTRLTGRV 496
           HL+   RR   R G R E   + + LNS+ K T+ + + S  + LTG+V
Sbjct: 119 HLKNNARRQVHREGERAEANLRRAHLNSLRKTTSSKRIHSWESLLTGKV 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,682
Number of Sequences: 27780
Number of extensions: 363133
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)