Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C06
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718     33   0.33 
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    30   1.7  
02_03_0246 - 16807619-16808145,16808208-16808868                       29   4.0  
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877     29   5.3  
09_04_0652 - 19227686-19227926,19229368-19232294                       28   7.1  
05_03_0296 - 11875922-11876378,11876705-11877045                       28   7.1  
11_04_0424 - 17508609-17508669,17509132-17509450,17509675-175097...    28   9.3  
09_06_0175 + 21350528-21351136                                         28   9.3  
06_01_0899 + 6918528-6918620,6918918-6918938,6921182-6921340           28   9.3  
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123...    28   9.3  

>09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718
          Length = 187

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 404 VAARDPHSESRVREAVVRYQGGQGRGTRFQWQHLAG 511
           VAARDP    R RE     + G+GRG R  W   +G
Sbjct: 63  VAARDPGVRVRAREGAEEEKKGRGRGRRRWWDWWSG 98


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 438 CERPLCAIRG-VKVGGRASSGSTSLAAIERDVIAVDASER 554
           C   LCAIR  V     AS+ ST+ A+++RD   +  S R
Sbjct: 154 CGASLCAIRDVVDAASSASAASTAAASLDRDTTPLTRSSR 193


>02_03_0246 - 16807619-16808145,16808208-16808868
          Length = 395

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 515 GRQRGAATGSASPDLDPPDSAQRPLALAT 429
           GR+R AA+ SASP   PP +A+ P   +T
Sbjct: 121 GRRRRAASPSASPCTTPPATARAPRTSST 149


>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
          Length = 446

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 506 RGAATGSASPDLDPPDSAQRPLALAT 429
           RGAATG+A+PD D       P   AT
Sbjct: 89  RGAATGAAAPDFDDLGEPSEPRDFAT 114


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 674 GGTSARFQKTLLEIIRQKRVXDRIHC 751
           GG SAR  K LLEI+  K      HC
Sbjct: 69  GGDSARLDKVLLEIMTSKHFASCEHC 94


>05_03_0296 - 11875922-11876378,11876705-11877045
          Length = 265

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 333 ISIRLLQSIDTKIVSSSTSAHGSRWRR 413
           +++ LL+++    VS  +  HG RWRR
Sbjct: 28  VNVHLLEAVARPGVSKGSERHGRRWRR 54


>11_04_0424 -
           17508609-17508669,17509132-17509450,17509675-17509786,
           17510649-17510714,17510861-17511008,17511662-17511904,
           17513226-17513426,17513745-17513883,17514532-17514889
          Length = 548

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 378 SSTSAHGSRWRRETRTQSRECERPLCAIRGVKVGGRASSGSTSLAAIER 524
           SS++A  S +R E  +++R+ +    A   V+ GG AS+   + A +ER
Sbjct: 43  SSSTARASPFRGEL-SEARDSDDGEAAAAAVEAGGGASTTGAACATVER 90


>09_06_0175 + 21350528-21351136
          Length = 202

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 587 RLRRPGLRSCPSSRDNAVLNVQSGVHVLSGGTSAR 691
           R RRPG  + P++R        S V +L GG  AR
Sbjct: 12  RSRRPGRNALPTNRPARAAEAPSVVVLLPGGVGAR 46


>06_01_0899 + 6918528-6918620,6918918-6918938,6921182-6921340
          Length = 90

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 351 QSIDTKIVSSSTSAHGSRWRRETRTQSRECERPLCAIRGVKVGGRASSG 497
           Q +D K  + +    G RW    +  + E  RP   I G   GG A++G
Sbjct: 23  QEVDGKTATMTMMKIGGRWLPIGKMVAAELRRPPDLIIGTSGGGSATNG 71


>05_01_0177 +
           1231679-1231753,1232259-1232546,1232608-1232685,
           1233458-1233673,1233862-1233981,1234079-1234804
          Length = 500

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 560 PDSRSKSTPRLRRPGLRSCPSS 625
           PD  S +TP+L RP  R  PS+
Sbjct: 333 PDKSSPTTPKLTRPASRQSPST 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,115,545
Number of Sequences: 37544
Number of extensions: 276176
Number of successful extensions: 989
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)