Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C05
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    80   8e-17
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   1.8  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    25   2.4  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   4.3  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    24   5.6  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    23   7.5  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    23   7.5  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    23   7.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    23   7.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    23   9.9  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    23   9.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    23   9.9  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 79.8 bits (188), Expect = 8e-17
 Identities = 34/54 (62%), Positives = 39/54 (72%)
 Frame = -3

Query: 180 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNXCRQCFREDAHDRGFKK 19
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLN  RQ FRE A+D GF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 296 NLTASVTAFSTCRSFVQVRHLEGVSNLLLVSEK 198
           NLT    +F+  ++   + HL+G+ NL  V  +
Sbjct: 105 NLTYLDLSFNNIKTIRNINHLKGLENLFFVQNR 137


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 44  SSLKHCLHXFKPYLRIKP 97
           SS+K C     PYL +KP
Sbjct: 53  SSMKRCRETIAPYLELKP 70


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 163 LVFSPSQIRTRISVMPI 113
           LV+ PSQIR R+S++ +
Sbjct: 26  LVYRPSQIRRRVSLLSL 42


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 119 HDRDPCPYL 145
           H RDPCPY+
Sbjct: 6   HTRDPCPYV 14


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 1040

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 84 KYGLNXCRQCFREDAHDRGFKK 19
          ++ LN C Q   +D H+ GF K
Sbjct: 9  QFTLNPCEQIPLDDKHNIGFNK 30


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 139 RTRISVMPILLQQAW 95
           +T + V+P LLQQ+W
Sbjct: 73  KTSVKVVPWLLQQSW 87


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 164 IFAWPILRN*IVSR*RATN*IHLQD--GELERKNDKLKKQ 277
           +F W +L   I+ R    N   ++     LER  DKLKKQ
Sbjct: 258 LFVWNVLFAFILPRLYVCNERSIKHLVASLERSGDKLKKQ 297


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 211  SLARNNLIS*NGPRKYLVFSPSQIRTRISVMPILLQQAWLNP 86
            SLAR +++   GP K L F    + T   V   L + + ++P
Sbjct: 918  SLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHP 959


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 86  RIKPCLLEQDRHDRDPCPYLRG*EYQI 166
           R  P LLE  ++  D CP  +G  YQ+
Sbjct: 438 RSNPTLLEFMQYHIDHCPAEKGETYQL 464


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 157 IPNICVAHFKKLNCFSLTSNKLD 225
           +P     +F K+ CF     KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 157 IPNICVAHFKKLNCFSLTSNKLD 225
           +P     +F K+ CF     KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,155,863
Number of Sequences: 5004
Number of extensions: 20085
Number of successful extensions: 52
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)