Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_C05
(302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 98 9e-22
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 30 0.28
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 27 2.0
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 27 2.0
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 27 2.0
Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical pr... 27 3.4
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 27 3.4
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 3.4
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 26 6.0
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 26 6.0
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 98.3 bits (234), Expect = 9e-22
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = -3
Query: 180 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNXCRQCFREDAHDRGFKKLD 13
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL+ CR+CFRE A D GFKKLD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 97 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 246
M A S PR+ + + N + +LNC S+T ++ ++P+ WRT
Sbjct: 93 MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRT 141
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
R10E8.6 protein.
Length = 1696
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -1
Query: 296 NLTASVTAFSTCRSFVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGIL 153
+L+ S+ F C +F E + LLV+E KW ++ G L
Sbjct: 1613 SLSTSIKLFFICENFDMENLYELIGRPLLVTEDAVKVRKWFFKLIGTL 1660
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 175 AHFKKLNCFSLTSNKLDTPSRWRT 246
A F +LNC ++T+N+ P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 97 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 246
M A S PR+ + + + + +LNC S+T ++ ++P+ WRT
Sbjct: 93 MKTAAASTCPRTCGLCCQTDAYSCPNVAYPRLNCASITLSQCNSPA-WRT 141
>Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical
protein F35E8.9 protein.
Length = 248
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 97 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 246
M A S PR+ + + + + +LNC S+T+++ +P+ WRT
Sbjct: 93 MKTAAQSTCPRTCGLCCQTSAYSCPNVAYPRLNCASITASQCISPA-WRT 141
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 186 LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 79
LK A W+ +P+R G +R C SC ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 78 RTCGLSHACWSRIGMTEILVRICEGEN 158
R C ++H C+S + E + CEGEN
Sbjct: 40 RVCPVAH-CYSSLTAPEPMTSTCEGEN 65
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 120 CRSCSNRHGLIRKYGLNXCRQC 55
CR C R+ + +G++ CR C
Sbjct: 47 CRVCERRYDGSQHFGIDICRAC 68
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 120 CRSCSNRHGLIRKYGLNXCRQC 55
CR C R+ + +G++ CR C
Sbjct: 57 CRVCERRYDGSQHFGIDICRAC 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,432,177
Number of Sequences: 27780
Number of extensions: 115061
Number of successful extensions: 303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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