Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C02
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   4.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.2  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    26   4.2  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.6  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   9.7  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    25   9.7  

>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 349 N*EETSNSILSGFYHRSRVISYY 281
           N EE+SN +   + HRS+ I YY
Sbjct: 498 NCEESSNYLWFNYSHRSKEIDYY 520


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 75   RPKLNLRTHNERIRLIVSCTVNSII 1
            + ++NL T + +IRL++SC  N +I
Sbjct: 976  KEEINLSTLHTQIRLLLSCLFNQLI 1000


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 600 PPINSSKMECFVEIHSKVTYTNKIDCDVLVKYARMPEPKKETVIL 466
           P + SS ++C       V Y+  +DC VL +      P  E++ L
Sbjct: 241 PKLCSSNLDCSHYSRVCVLYSGGVDCGVLARLMHDIVPNNESIDL 285


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 247 YTTNIINVNRTKHRLLIYFKNNINVID 167
           +  + + V ++K ++  +FKNNIN+ +
Sbjct: 391 FVKHYLTVPKSKEKISAFFKNNINLFE 417


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 510 KYARMPEPKKETVILPQKEKLKSWL 436
           K   +PEP  E V +P+K+ L+S L
Sbjct: 119 KSENVPEPAGEKVSMPEKQDLQSAL 143


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 495 PEPKKETVILPQKEKLKSWLSKPP 424
           PEP++E V  P  E+ K+  S PP
Sbjct: 85  PEPEQEVVASPVTEQKKAEPSAPP 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,407
Number of Sequences: 5004
Number of extensions: 39916
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)