Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_C02
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23524-1|AAC46822.1|  268|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    28   6.8  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    27   9.0  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    27   9.0  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    27   9.0  

>U23524-1|AAC46822.1|  268|Caenorhabditis elegans Hypothetical
           protein C29F5.3 protein.
          Length = 268

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 579 MECFVEIHSKVTYTNKIDCDVLVKY-ARMPEPKKETVILPQKEKLK 445
           ME  VE+  K T +N++  DVLV     +PE   ++V+   K K++
Sbjct: 198 MEPVVEVSEKQTNSNELSDDVLVPTPLPLPEKSSQSVVNVNKGKIE 243


>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
 Frame = +3

Query: 114 ILIKHNIFAMIIIARRNTS-----ITLILF--LK*IKSLCLVLFTL 230
           IL+   IFA III RR TS     I ++ F  +  IK +C VLF L
Sbjct: 58  ILVNIVIFACIIIRRRTTSSHVFYIIILNFTIIDTIKGICSVLFAL 103


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 99   KCFFLILIKHNIFAMII---IARRNTSITLILFLK*IKSLCLVLFTL 230
            K  F +L+  N F ++I   ++      T +L L  I ++C +LFTL
Sbjct: 1255 KQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTL 1301


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 99   KCFFLILIKHNIFAMII---IARRNTSITLILFLK*IKSLCLVLFTL 230
            K  F +L+  N F ++I   ++      T +L L  I ++C +LFTL
Sbjct: 1233 KQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTL 1279


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 99   KCFFLILIKHNIFAMII---IARRNTSITLILFLK*IKSLCLVLFTL 230
            K  F +L+  N F ++I   ++      T +L L  I ++C +LFTL
Sbjct: 1255 KQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTL 1301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,056
Number of Sequences: 27780
Number of extensions: 226800
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)