Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_B21
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0612 + 4902197-4902929,4903443-4904071 30 1.6
09_04_0559 + 18516732-18516746,18516893-18517330 30 1.6
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 29 2.8
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 3.7
12_01_0419 - 3316866-3318172,3318249-3318360 29 4.9
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 29 4.9
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 28 6.5
06_03_0854 + 25400855-25403741,25406174-25407708 28 6.5
03_06_0316 + 33091194-33091370,33091451-33092155 28 6.5
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 28 6.5
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -1
Query: 642 SAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLAD 520
+AA PN V ID+ AAA P + PEAA P L D
Sbjct: 25 AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = -1
Query: 699 AEISKEXKPSATDAEGSADSAAIIPNMVKKIDL-APTVESDAAAVPEIKTPEAADAPKLA 523
AE KE +P + E + P + A E A E+K EAA AP
Sbjct: 71 AEEVKEAEPEPAEPEAEPAKEEVAPEPAAAAEAEAKEAEPAAQVAEEVKEEEAAPAPAAE 130
Query: 522 DNPVDEDKP 496
+ V+E P
Sbjct: 131 EVKVEEAAP 139
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +2
Query: 134 TPLSLTWGSFTHICYS*SLALAAEHELM 217
TPL L WGSF CY SL EH M
Sbjct: 236 TPLQLQWGSFQSYCYR-SLIDGMEHIAM 262
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = -1
Query: 657 EGSADSAAIIPNMVKKIDL-------APTVESDAAAVPEIKTPEAADAPKLADNPVD--E 505
+GSA S I N + ++L AP + S AVP P A D P LAD P + E
Sbjct: 82 DGSAASFGISINHTRALELPGVCKVQAPPI-SQCTAVPT--PPPAPDTPTLADEPAETNE 138
Query: 504 DKPA 493
D+P+
Sbjct: 139 DEPS 142
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = -1
Query: 708 ATVAEISKEXKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPK 529
ATV E + P+A + A P + P E AA PE + P+ P
Sbjct: 306 ATVDEPEQPKPPAAVEPPVQEPPAEETPTATEPEPEPPAAEEPPAAEPE-QEPQPETPPV 364
Query: 528 LADNPVDEDKP 496
++ P +E P
Sbjct: 365 ESETPAEEQAP 375
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 28.7 bits (61), Expect = 4.9
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -1
Query: 708 ATVAEISKEXKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPE---IKTPEAAD 538
A AE E P+AT+ +G + A P + +PT + A P +P AA
Sbjct: 221 AESAEAVAEGSPTATEQKGITHTPAPAPCVSPVAAPSPTPCASPVAAPSPAPCVSPVAAP 280
Query: 537 AP-KLADNPVDEDKPADI 487
+P +PV EDK ++
Sbjct: 281 SPAPPCKSPVPEDKSCEL 298
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -1
Query: 678 KPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDK 499
K SA +EGS+ ++P + K+D P + I P+ + LA + ++DK
Sbjct: 464 KISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQDIERGGLAVDCGEDDK 523
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = -1
Query: 702 VAEISKEXKPSATDAEGSADSAAIIPN----MVKKIDLAPTVESDAAAVPEIKTPEAA 541
V + PSA A A + ++ PN V LAP + AAA P + P AA
Sbjct: 609 VVTVGAPPPPSAAPAPAPASAPSLEPNDIIAPVVSSTLAPGASAAAAAAPAVAPPAAA 666
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/69 (31%), Positives = 26/69 (37%)
Frame = -1
Query: 699 AEISKEXKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLAD 520
A + KP+A AA P K +S AAA P+ AA PK A
Sbjct: 128 AAAKPKAKPAAAAKPKPKPKAAAKPKAAAKPKAKAPAKSKAAAKPKAAAKPAA-KPKAAA 186
Query: 519 NPVDEDKPA 493
P KPA
Sbjct: 187 KPKSPAKPA 195
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = -1
Query: 696 EISKEXKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADN 517
E+ K + AT D+ + K++ + S AAA P +P A + PK +
Sbjct: 159 ELKKLREQLATAEAAKKDAQVALEEAKKRVGTKGSPASAAAASPRSPSPVAVETPKKTEQ 218
Query: 516 PVDEDKP 496
+ +P
Sbjct: 219 QLKVTEP 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,332
Number of Sequences: 37544
Number of extensions: 224348
Number of successful extensions: 676
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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