Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B17
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    59   2e-10
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    59   2e-10
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    31   0.052
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   3.4  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   7.9  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 58.8 bits (136), Expect = 2e-10
 Identities = 29/60 (48%), Positives = 35/60 (58%)
 Frame = -2

Query: 337 LMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 158
           L R+NPR+++WTVLYRR  KKG  EE               IVGA+L  I  KRN +PEV
Sbjct: 41  LQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 58.8 bits (136), Expect = 2e-10
 Identities = 29/60 (48%), Positives = 35/60 (58%)
 Frame = -2

Query: 337 LMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 158
           L R+NPR+++WTVLYRR  KKG  EE               IVGA+L  I  KRN +PEV
Sbjct: 41  LQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 31.1 bits (67), Expect = 0.052
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 334 MRRNPRKVTWTVLYRRKFKK 275
           M+RNPRKV WT  YR+   K
Sbjct: 42  MKRNPRKVAWTKAYRKAHGK 61


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 120 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 215
           +  L ACS C + TS       I S S AP++
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPSM 136


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 123 AALMACSLC-ALRTSGFILRLAIMSLSEA 206
           A+ M CSL  AL TSGF    AIM  +EA
Sbjct: 801 ASGMMCSLAMALPTSGFPNMTAIMMENEA 829


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 956,467
Number of Sequences: 5004
Number of extensions: 13667
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)