Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B17
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    41   3e-04
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    41   3e-04
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    40   7e-04
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    29   0.79 
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    29   0.79 
03_01_0649 + 4757352-4758167                                           27   5.6  
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273...    26   9.8  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 331 RRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 158
           R  P K+TWT +YR++ KK    E               +IVGASL  I  KR  KPEV
Sbjct: 45  RLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 331  RRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 158
            R  P K+TWT +YR++ KK    E               +IVGA+L  I  KR+ KPEV
Sbjct: 1055 RLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 331 RRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 158
           R  P K+TWT +YR++ KK    E               +IVGA+L  I  KR  KPEV
Sbjct: 71  RLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 334 MRRNPRKVTWTVLYR 290
           M+RNPRKV WT  YR
Sbjct: 42  MKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 334 MRRNPRKVTWTVLYR 290
           M+RNPRKV WT  YR
Sbjct: 80  MKRNPRKVKWTKAYR 94


>03_01_0649 + 4757352-4758167
          Length = 271

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 ACSLCALRTSGFILRLAIM 191
           ACS CALRT G +L  A++
Sbjct: 85  ACSPCALRTLGAVLAAALL 103


>04_04_1619 -
           34825922-34825998,34826109-34826200,34827281-34827399,
           34827507-34827734,34827904-34828164,34828258-34828614,
           34828803-34828916,34828990-34829063,34829176-34829359,
           34829685-34829830,34829951-34830309,34835569-34835789
          Length = 743

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 231 WVLLVRFFACSSSWPFLNLRLYRTVHVTLRGFLLIK 338
           W+LL+R+F  +  W  + + L+  + +++  F  IK
Sbjct: 270 WLLLIRYFVAAMPW--ITVVLFNALVISVTMFFYIK 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,229,422
Number of Sequences: 37544
Number of extensions: 90460
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)