Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B17
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    45   1e-05
Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical p...    27   5.0  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 334 MRRNPRKVTWTVLYRRKFKK---GQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRN 173
           +RRNPR + WTVLYR K KK   GQE+               A+ G SL  I+AKRN
Sbjct: 42  LRRNPRDIRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98


>Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical
           protein C47A4.2c protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 117 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 278
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 178


>Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical
           protein C47A4.2b protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 117 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 278
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 246


>Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical
           protein C47A4.2a protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 117 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 278
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 240


>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 129 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 278
           +MA    +   S FIL + I  +    + A W+ + L V FF   ++ PF
Sbjct: 397 IMAVISMSSWVSAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446


>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
           protein F49E2.5j protein.
          Length = 1100

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 299 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 213
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 299 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 213
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTAD 488


>Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical
           protein F49E2.5f protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 299 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 213
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,334,492
Number of Sequences: 27780
Number of extensions: 79068
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)