Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B16
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U40029-5|AAA81125.2|  457|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U40029-4|ABD94116.1|  471|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical
           protein F55A4.10 protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 342 HTKSHSVITSGDESGRSSREKRVRNYVSVSFTTCQRPHRSLENNESV 482
           H ++    TS + S  SS   + R  +SV  +T +  H+S EN+ES+
Sbjct: 148 HPEAEIRTTSSNSSDLSSSISQSRASLSVDESTKESMHQSFENSESI 194


>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical
           protein T28A8.7 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 416 VPHPLLSATSTALVSRCNNRMAFSVYVASR--RCDRTVYVVSESVAA 282
           +  P+ SAT+    +R  +R  FSV++  R  RCD   + + E + A
Sbjct: 240 ISKPIASATAAIAQNRKTSRSFFSVFINGRSVRCDILKHPIDEVLGA 286


>Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical
           protein T10B9.10 protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 430 RLPLVNDHIVRWKTTRALVSPALDRRLWSELTGSYADITTVSLR 561
           R+PLV     RWK  R L SP    +   ++ G+  +  T  +R
Sbjct: 114 RVPLVAAQGHRWKRLRTLASPTFSNKSLRKIMGTVEESVTELVR 157


>U40029-5|AAA81125.2|  457|Caenorhabditis elegans Hypothetical
           protein F10G7.5a protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -1

Query: 380 LVSRCNNRMAFSVYVASRRCDRTVYVVSESVAATPALSSIREDFMLFIMCI*YSMFRRFN 201
           +  +C ++  FSV     +C  +V  +   + +T ALS I  ++ LFI+C  + +   F 
Sbjct: 367 ITHKCFSKANFSVMYGFLQCAVSVAGLIAGLISTHALSEIGFEY-LFIVCGCFMLTSLFL 425

Query: 200 RFVI 189
            F++
Sbjct: 426 TFIV 429


>U40029-4|ABD94116.1|  471|Caenorhabditis elegans Hypothetical
           protein F10G7.5b protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -1

Query: 380 LVSRCNNRMAFSVYVASRRCDRTVYVVSESVAATPALSSIREDFMLFIMCI*YSMFRRFN 201
           +  +C ++  FSV     +C  +V  +   + +T ALS I  ++ LFI+C  + +   F 
Sbjct: 381 ITHKCFSKANFSVMYGFLQCAVSVAGLIAGLISTHALSEIGFEY-LFIVCGCFMLTSLFL 439

Query: 200 RFVI 189
            F++
Sbjct: 440 TFIV 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,205,761
Number of Sequences: 27780
Number of extensions: 237106
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)