Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B13
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    55   7e-09
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    34   0.013
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   1.5  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.7  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   8.3  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.3  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 26/70 (37%), Positives = 42/70 (60%)
 Frame = -2

Query: 557 LFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGD 378
           LFIG  IF  EGI ++LP++  MAKP++    P +L   M+ + LL++ +G L Y  +G 
Sbjct: 459 LFIGVAIFTYEGICLILPIQEQMAKPKNL---PKLLTGVMAAISLLFISIGLLSYAAFGS 515

Query: 377 QAMGSITLNL 348
           +    + LN+
Sbjct: 516 KVKTVVILNM 525


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
 Frame = -2

Query: 458 GVLNLTMSVVV----LLYMIMGFLGYVKYGDQAMGSITLNLDTGEXXXXXXXXXXXXXXX 291
           G +N TM   +    LLY+++   GY+ +G  A G+I    D                  
Sbjct: 235 GFVNFTMFTAIISSTLLYLLVAITGYLSFGSLASGNIIAMYDNTSIWIIGGKLAIVVLVL 294

Query: 290 FTYTLQFYVPMEIVWRN-TKDHVAQKYHNITEAVMRXXXXXXXXXXXXXLPSLEQVIGLE 114
           F+Y LQ +     V++   + + A    +   AV+              L SLE V+   
Sbjct: 295 FSYPLQCHPCRNSVYQAIRRSYSAHDMSDGYHAVITLCILLFTHSLALLLSSLEMVLAFV 354

Query: 113 GAFFYSFLGLIAPSILDLIF 54
           G+   +F+  I P  L   F
Sbjct: 355 GSTGSTFISFILPGSLYYFF 374


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 313 IFAIRAGISPVSKFRVILPIAWSPYLTYPR 402
           I ++   ISP   F  ILP  WS + T PR
Sbjct: 235 ISSVPKDISPQKYFSCILPQVWSLFSTQPR 264


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +1

Query: 490 IVFSTGSTTPIPSIAKI 540
           +VFST STTP+P+++ +
Sbjct: 452 LVFSTTSTTPLPALSHL 468


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 587 PTSVXIGNLPLFIGTVIFAMEGIGVVLPVENTM 489
           PT+V  G+ P F G ++    G+G+   + +T+
Sbjct: 46  PTAVQGGSSPGFFGNLVSTAAGVGIGSAIGHTV 78


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 481 GLAIVFSTGSTTPIPSIAKITVPMNNGKFP 570
           G  IV ++ +T P+ ++ ++   +NN  FP
Sbjct: 205 GCLIVITSHNTNPMATVMRLFKEINNAPFP 234


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 101 YSFLGLIAPSILDLIFKWERGLGRNNWILFKD 6
           + FL L APS     F+ E G+    W+   D
Sbjct: 820 HKFLDLSAPSTNSKDFRSEAGIPERRWLYISD 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,922
Number of Sequences: 5004
Number of extensions: 47972
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)